Results 81 - 100 of 181 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26641 | 5' | -54.3 | NC_005808.1 | + | 994 | 0.66 | 0.680938 |
Target: 5'- cCUGGCggUGCcgUGGUucaccgCAGCGUCGAa -3' miRNA: 3'- -GGCCGuuGCGuuGCCG------GUCGUAGUUc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 9208 | 0.66 | 0.685409 |
Target: 5'- cUCGGCGGCGCGGCGcacguucugcggcgcGCCcGGCggCAGu -3' miRNA: 3'- -GGCCGUUGCGUUGC---------------CGG-UCGuaGUUc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 1043 | 0.66 | 0.690986 |
Target: 5'- gCCGGCGGCaGCAugucgccGCGaaCCGGCGUCcAGu -3' miRNA: 3'- -GGCCGUUG-CGU-------UGCc-GGUCGUAGuUC- -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 23532 | 0.66 | 0.692099 |
Target: 5'- uCCaGGCGGCGCAcGCGGUCgauGGCcUCGGc -3' miRNA: 3'- -GG-CCGUUGCGU-UGCCGG---UCGuAGUUc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 30421 | 0.66 | 0.7032 |
Target: 5'- cUCGGCAugGCGAUGaGCgCGGg--CAGGg -3' miRNA: 3'- -GGCCGUugCGUUGC-CG-GUCguaGUUC- -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 449 | 0.66 | 0.7032 |
Target: 5'- -gGGCuGCuGC-GCGGCCAGCuugCGGGc -3' miRNA: 3'- ggCCGuUG-CGuUGCCGGUCGua-GUUC- -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 7321 | 0.66 | 0.7032 |
Target: 5'- aUGGUcugcgAACGCAGCaGCCgguuGGCGUCGAu -3' miRNA: 3'- gGCCG-----UUGCGUUGcCGG----UCGUAGUUc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 10875 | 0.66 | 0.714228 |
Target: 5'- uUCGGuCGGCGCGAUGcGCgCGGCGUa--- -3' miRNA: 3'- -GGCC-GUUGCGUUGC-CG-GUCGUAguuc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 42144 | 0.66 | 0.714228 |
Target: 5'- gCGGUggUGC-GCGGCgAGCAg-AAGg -3' miRNA: 3'- gGCCGuuGCGuUGCCGgUCGUagUUC- -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 11379 | 0.66 | 0.714228 |
Target: 5'- cCCGGCAccucggugGCGaccugAugGGCCAGgGUCu-- -3' miRNA: 3'- -GGCCGU--------UGCg----UugCCGGUCgUAGuuc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 18471 | 0.66 | 0.714228 |
Target: 5'- gCCGGCGGCGU--CGGCCGauuCGUCc-- -3' miRNA: 3'- -GGCCGUUGCGuuGCCGGUc--GUAGuuc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 30299 | 0.66 | 0.718616 |
Target: 5'- uCgGGUAGCGCcccuGCGaGCCGcuuugcguguacuucGCGUCGGGg -3' miRNA: 3'- -GgCCGUUGCGu---UGC-CGGU---------------CGUAGUUC- -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 4414 | 1.12 | 0.000547 |
Target: 5'- aCCGGCAACGCAACGGCCAGCAUCAAGg -3' miRNA: 3'- -GGCCGUUGCGUUGCCGGUCGUAGUUC- -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 21403 | 0.85 | 0.047236 |
Target: 5'- uUGGCAaccuggGCGCggUGGCCGGCAUCAAGc -3' miRNA: 3'- gGCCGU------UGCGuuGCCGGUCGUAGUUC- -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 32606 | 0.82 | 0.078302 |
Target: 5'- gCCGGCGGCaGCAuccUGGCCGGCAUCAc- -3' miRNA: 3'- -GGCCGUUG-CGUu--GCCGGUCGUAGUuc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 253 | 0.78 | 0.143883 |
Target: 5'- cCCGGCAGCGUGACGGugcCCAGCGacacCGGGg -3' miRNA: 3'- -GGCCGUUGCGUUGCC---GGUCGUa---GUUC- -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 23518 | 0.78 | 0.156175 |
Target: 5'- gCCGGCGuguacGCGCGAaccauccgcauccCGGCCGGCGUCGc- -3' miRNA: 3'- -GGCCGU-----UGCGUU-------------GCCGGUCGUAGUuc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 28637 | 0.76 | 0.195131 |
Target: 5'- gCCGGUGGCcgacgugcgcgccGCGAUGGCCGGCGgccgCAAGg -3' miRNA: 3'- -GGCCGUUG-------------CGUUGCCGGUCGUa---GUUC- -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 8454 | 0.76 | 0.20668 |
Target: 5'- aCUGGCuACGCAGCcagcgcgaGGCCGGguUCGAGc -3' miRNA: 3'- -GGCCGuUGCGUUG--------CCGGUCguAGUUC- -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 12629 | 0.76 | 0.212385 |
Target: 5'- gCCGcGCAGCGCGA-GGCCGGCAagAAa -3' miRNA: 3'- -GGC-CGUUGCGUUgCCGGUCGUagUUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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