miRNA display CGI


Results 81 - 100 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26641 5' -54.3 NC_005808.1 + 994 0.66 0.680938
Target:  5'- cCUGGCggUGCcgUGGUucaccgCAGCGUCGAa -3'
miRNA:   3'- -GGCCGuuGCGuuGCCG------GUCGUAGUUc -5'
26641 5' -54.3 NC_005808.1 + 9208 0.66 0.685409
Target:  5'- cUCGGCGGCGCGGCGcacguucugcggcgcGCCcGGCggCAGu -3'
miRNA:   3'- -GGCCGUUGCGUUGC---------------CGG-UCGuaGUUc -5'
26641 5' -54.3 NC_005808.1 + 1043 0.66 0.690986
Target:  5'- gCCGGCGGCaGCAugucgccGCGaaCCGGCGUCcAGu -3'
miRNA:   3'- -GGCCGUUG-CGU-------UGCc-GGUCGUAGuUC- -5'
26641 5' -54.3 NC_005808.1 + 23532 0.66 0.692099
Target:  5'- uCCaGGCGGCGCAcGCGGUCgauGGCcUCGGc -3'
miRNA:   3'- -GG-CCGUUGCGU-UGCCGG---UCGuAGUUc -5'
26641 5' -54.3 NC_005808.1 + 30421 0.66 0.7032
Target:  5'- cUCGGCAugGCGAUGaGCgCGGg--CAGGg -3'
miRNA:   3'- -GGCCGUugCGUUGC-CG-GUCguaGUUC- -5'
26641 5' -54.3 NC_005808.1 + 449 0.66 0.7032
Target:  5'- -gGGCuGCuGC-GCGGCCAGCuugCGGGc -3'
miRNA:   3'- ggCCGuUG-CGuUGCCGGUCGua-GUUC- -5'
26641 5' -54.3 NC_005808.1 + 7321 0.66 0.7032
Target:  5'- aUGGUcugcgAACGCAGCaGCCgguuGGCGUCGAu -3'
miRNA:   3'- gGCCG-----UUGCGUUGcCGG----UCGUAGUUc -5'
26641 5' -54.3 NC_005808.1 + 10875 0.66 0.714228
Target:  5'- uUCGGuCGGCGCGAUGcGCgCGGCGUa--- -3'
miRNA:   3'- -GGCC-GUUGCGUUGC-CG-GUCGUAguuc -5'
26641 5' -54.3 NC_005808.1 + 42144 0.66 0.714228
Target:  5'- gCGGUggUGC-GCGGCgAGCAg-AAGg -3'
miRNA:   3'- gGCCGuuGCGuUGCCGgUCGUagUUC- -5'
26641 5' -54.3 NC_005808.1 + 11379 0.66 0.714228
Target:  5'- cCCGGCAccucggugGCGaccugAugGGCCAGgGUCu-- -3'
miRNA:   3'- -GGCCGU--------UGCg----UugCCGGUCgUAGuuc -5'
26641 5' -54.3 NC_005808.1 + 18471 0.66 0.714228
Target:  5'- gCCGGCGGCGU--CGGCCGauuCGUCc-- -3'
miRNA:   3'- -GGCCGUUGCGuuGCCGGUc--GUAGuuc -5'
26641 5' -54.3 NC_005808.1 + 30299 0.66 0.718616
Target:  5'- uCgGGUAGCGCcccuGCGaGCCGcuuugcguguacuucGCGUCGGGg -3'
miRNA:   3'- -GgCCGUUGCGu---UGC-CGGU---------------CGUAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 4414 1.12 0.000547
Target:  5'- aCCGGCAACGCAACGGCCAGCAUCAAGg -3'
miRNA:   3'- -GGCCGUUGCGUUGCCGGUCGUAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 21403 0.85 0.047236
Target:  5'- uUGGCAaccuggGCGCggUGGCCGGCAUCAAGc -3'
miRNA:   3'- gGCCGU------UGCGuuGCCGGUCGUAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 32606 0.82 0.078302
Target:  5'- gCCGGCGGCaGCAuccUGGCCGGCAUCAc- -3'
miRNA:   3'- -GGCCGUUG-CGUu--GCCGGUCGUAGUuc -5'
26641 5' -54.3 NC_005808.1 + 253 0.78 0.143883
Target:  5'- cCCGGCAGCGUGACGGugcCCAGCGacacCGGGg -3'
miRNA:   3'- -GGCCGUUGCGUUGCC---GGUCGUa---GUUC- -5'
26641 5' -54.3 NC_005808.1 + 23518 0.78 0.156175
Target:  5'- gCCGGCGuguacGCGCGAaccauccgcauccCGGCCGGCGUCGc- -3'
miRNA:   3'- -GGCCGU-----UGCGUU-------------GCCGGUCGUAGUuc -5'
26641 5' -54.3 NC_005808.1 + 28637 0.76 0.195131
Target:  5'- gCCGGUGGCcgacgugcgcgccGCGAUGGCCGGCGgccgCAAGg -3'
miRNA:   3'- -GGCCGUUG-------------CGUUGCCGGUCGUa---GUUC- -5'
26641 5' -54.3 NC_005808.1 + 8454 0.76 0.20668
Target:  5'- aCUGGCuACGCAGCcagcgcgaGGCCGGguUCGAGc -3'
miRNA:   3'- -GGCCGuUGCGUUG--------CCGGUCguAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 12629 0.76 0.212385
Target:  5'- gCCGcGCAGCGCGA-GGCCGGCAagAAa -3'
miRNA:   3'- -GGC-CGUUGCGUUgCCGGUCGUagUUc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.