miRNA display CGI


Results 81 - 100 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26641 5' -54.3 NC_005808.1 + 42417 0.66 0.685409
Target:  5'- gCCGGCGguagcgaauccccagGCGCuugaGGCaCGGCGUCcAGu -3'
miRNA:   3'- -GGCCGU---------------UGCGuug-CCG-GUCGUAGuUC- -5'
26641 5' -54.3 NC_005808.1 + 18171 0.66 0.690986
Target:  5'- aCCGGaCGGCGCGAaggcguccugguuCGcGCCGGCuUCGGc -3'
miRNA:   3'- -GGCC-GUUGCGUU-------------GC-CGGUCGuAGUUc -5'
26641 5' -54.3 NC_005808.1 + 31093 0.66 0.7032
Target:  5'- cCCGcGCGAuUGCcuCGGCCGGCAa---- -3'
miRNA:   3'- -GGC-CGUU-GCGuuGCCGGUCGUaguuc -5'
26641 5' -54.3 NC_005808.1 + 20816 0.66 0.714228
Target:  5'- -aGcGCGGCGCAGCGccucuacggcGCCAGCAgCAu- -3'
miRNA:   3'- ggC-CGUUGCGUUGC----------CGGUCGUaGUuc -5'
26641 5' -54.3 NC_005808.1 + 32416 0.66 0.714228
Target:  5'- gCGGCGAcCGCAGCgaccuGGgCGGCgguuGUCGGGa -3'
miRNA:   3'- gGCCGUU-GCGUUG-----CCgGUCG----UAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 19559 0.66 0.714228
Target:  5'- aCGGUu-CGCAGCGGCCuGCc----- -3'
miRNA:   3'- gGCCGuuGCGUUGCCGGuCGuaguuc -5'
26641 5' -54.3 NC_005808.1 + 15594 0.66 0.714228
Target:  5'- gCCGGCAccgUGCAuauCGGCCuGCccAUCAc- -3'
miRNA:   3'- -GGCCGUu--GCGUu--GCCGGuCG--UAGUuc -5'
26641 5' -54.3 NC_005808.1 + 12497 0.66 0.714228
Target:  5'- gUCGGCGacaucgacaGCGCcACcaaGGaCGGCAUCAAGg -3'
miRNA:   3'- -GGCCGU---------UGCGuUG---CCgGUCGUAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 19351 0.66 0.714228
Target:  5'- cCCaGGCGaccACGCuguucuACGGCgauucCAGCAUCGAc -3'
miRNA:   3'- -GG-CCGU---UGCGu-----UGCCG-----GUCGUAGUUc -5'
26641 5' -54.3 NC_005808.1 + 19632 0.78 0.139853
Target:  5'- gCgGGCcGCGaCAuCGGCCAGCGUCGGGu -3'
miRNA:   3'- -GgCCGuUGC-GUuGCCGGUCGUAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 39663 0.76 0.190356
Target:  5'- gCCGcGCGACGCgguGugGGCCGGCAUgGGa -3'
miRNA:   3'- -GGC-CGUUGCG---UugCCGGUCGUAgUUc -5'
26641 5' -54.3 NC_005808.1 + 4275 0.76 0.195668
Target:  5'- gCCGGCAugGUGAUGGCC-GUGUCGGc -3'
miRNA:   3'- -GGCCGUugCGUUGCCGGuCGUAGUUc -5'
26641 5' -54.3 NC_005808.1 + 28403 0.76 0.212385
Target:  5'- gCCGGCGGCGCGGCG-CCAGUAg---- -3'
miRNA:   3'- -GGCCGUUGCGUUGCcGGUCGUaguuc -5'
26641 5' -54.3 NC_005808.1 + 21276 0.73 0.291828
Target:  5'- gUCGGCGuaagugucgGCcCAGCGGUCGGCGUCGAa -3'
miRNA:   3'- -GGCCGU---------UGcGUUGCCGGUCGUAGUUc -5'
26641 5' -54.3 NC_005808.1 + 20212 0.73 0.291828
Target:  5'- uUGGCAGCGCccGCGGCCGGCuGUUg-- -3'
miRNA:   3'- gGCCGUUGCGu-UGCCGGUCG-UAGuuc -5'
26641 5' -54.3 NC_005808.1 + 22536 0.73 0.299405
Target:  5'- aCGcGCAGCGCGcGCGuGCCGGUguuGUCGAGg -3'
miRNA:   3'- gGC-CGUUGCGU-UGC-CGGUCG---UAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 41711 0.73 0.307133
Target:  5'- uCUGGaaCAACGCGGCGGCCcuCGUCGAu -3'
miRNA:   3'- -GGCC--GUUGCGUUGCCGGucGUAGUUc -5'
26641 5' -54.3 NC_005808.1 + 25619 0.73 0.315012
Target:  5'- aCGGCGGCGCggUcGCCAGCAgcgCGu- -3'
miRNA:   3'- gGCCGUUGCGuuGcCGGUCGUa--GUuc -5'
26641 5' -54.3 NC_005808.1 + 20906 0.72 0.33956
Target:  5'- gCCGGCAACGUgucGAUGcCCAGCcuuUCGAGu -3'
miRNA:   3'- -GGCCGUUGCG---UUGCcGGUCGu--AGUUC- -5'
26641 5' -54.3 NC_005808.1 + 9318 0.72 0.34719
Target:  5'- cCUGGCGGCGCAcgucggcGCGGCgGGCGgcggCAu- -3'
miRNA:   3'- -GGCCGUUGCGU-------UGCCGgUCGUa---GUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.