miRNA display CGI


Results 61 - 80 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26641 5' -54.3 NC_005808.1 + 34940 0.67 0.602075
Target:  5'- aCuGCAGCGCAcgcucgGCGGCCGGCu----- -3'
miRNA:   3'- gGcCGUUGCGU------UGCCGGUCGuaguuc -5'
26641 5' -54.3 NC_005808.1 + 37397 0.73 0.299405
Target:  5'- gUCGGCAAUGCGuCGuuCCAGCGUCGAu -3'
miRNA:   3'- -GGCCGUUGCGUuGCc-GGUCGUAGUUc -5'
26641 5' -54.3 NC_005808.1 + 22390 0.69 0.492332
Target:  5'- cUCGGC-GCGUucggcACGGCCAGCAgCAu- -3'
miRNA:   3'- -GGCCGuUGCGu----UGCCGGUCGUaGUuc -5'
26641 5' -54.3 NC_005808.1 + 32868 0.69 0.524467
Target:  5'- aCCGGCAgacGCGCAGCa-CCAGCGaggugcCGAGg -3'
miRNA:   3'- -GGCCGU---UGCGUUGccGGUCGUa-----GUUC- -5'
26641 5' -54.3 NC_005808.1 + 11236 0.69 0.532083
Target:  5'- aCGGCcgaccAGCGCAcgcaacgugcgcagGCGGCCcAGCAgCAGGc -3'
miRNA:   3'- gGCCG-----UUGCGU--------------UGCCGG-UCGUaGUUC- -5'
26641 5' -54.3 NC_005808.1 + 39829 0.75 0.236571
Target:  5'- gCGGCcacGCGCAGCGgcGCCAGCAccagCGAGg -3'
miRNA:   3'- gGCCGu--UGCGUUGC--CGGUCGUa---GUUC- -5'
26641 5' -54.3 NC_005808.1 + 24859 0.71 0.38348
Target:  5'- aCGGCGACuuCAAC-GCgGGCAUCGAGg -3'
miRNA:   3'- gGCCGUUGc-GUUGcCGgUCGUAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 13246 0.7 0.449958
Target:  5'- gCCGGCcaagggcgcccAGCGCGGCcgacacuGGCCGaCAUCGAGg -3'
miRNA:   3'- -GGCCG-----------UUGCGUUG-------CCGGUcGUAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 4687 0.7 0.468321
Target:  5'- gCGGCAGCGCGGgccaacauUGGCCuggcugaccugggcGGCAUCGc- -3'
miRNA:   3'- gGCCGUUGCGUU--------GCCGG--------------UCGUAGUuc -5'
26641 5' -54.3 NC_005808.1 + 22315 0.71 0.392705
Target:  5'- gCCGGCGaauACGCcaucGCGGCCGacaaccagggccGCGUCAAu -3'
miRNA:   3'- -GGCCGU---UGCGu---UGCCGGU------------CGUAGUUc -5'
26641 5' -54.3 NC_005808.1 + 28637 0.76 0.195131
Target:  5'- gCCGGUGGCcgacgugcgcgccGCGAUGGCCGGCGgccgCAAGg -3'
miRNA:   3'- -GGCCGUUG-------------CGUUGCCGGUCGUa---GUUC- -5'
26641 5' -54.3 NC_005808.1 + 8454 0.76 0.20668
Target:  5'- aCUGGCuACGCAGCcagcgcgaGGCCGGguUCGAGc -3'
miRNA:   3'- -GGCCGuUGCGUUG--------CCGGUCguAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 3945 0.67 0.613342
Target:  5'- gCGGCGACgGCAgcGCGGCCuacAGCGaCGGc -3'
miRNA:   3'- gGCCGUUG-CGU--UGCCGG---UCGUaGUUc -5'
26641 5' -54.3 NC_005808.1 + 9442 0.67 0.647206
Target:  5'- gUGGCugcacAAUGCAcGCGGCC-GCAUCAu- -3'
miRNA:   3'- gGCCG-----UUGCGU-UGCCGGuCGUAGUuc -5'
26641 5' -54.3 NC_005808.1 + 13575 0.66 0.669727
Target:  5'- aCGGCAAaccgcuuaccuCGCccaaaggcGCGGUCGGCAUCGc- -3'
miRNA:   3'- gGCCGUU-----------GCGu-------UGCCGGUCGUAGUuc -5'
26641 5' -54.3 NC_005808.1 + 5654 0.66 0.680938
Target:  5'- -aGGCGgacaucgacACgGUGGCGGCCAGCGUUg-- -3'
miRNA:   3'- ggCCGU---------UG-CGUUGCCGGUCGUAGuuc -5'
26641 5' -54.3 NC_005808.1 + 35238 0.67 0.65848
Target:  5'- aCCGG-AugGC--CGGCCAGCAguUCGGc -3'
miRNA:   3'- -GGCCgUugCGuuGCCGGUCGU--AGUUc -5'
26641 5' -54.3 NC_005808.1 + 15025 0.68 0.590834
Target:  5'- aCCGGCGACuuCAAC-GCgAGCAUCGc- -3'
miRNA:   3'- -GGCCGUUGc-GUUGcCGgUCGUAGUuc -5'
26641 5' -54.3 NC_005808.1 + 9854 0.67 0.624627
Target:  5'- uUCGGCGuGCGCGACcuGGCC-GCGUgGAa -3'
miRNA:   3'- -GGCCGU-UGCGUUG--CCGGuCGUAgUUc -5'
26641 5' -54.3 NC_005808.1 + 17682 0.67 0.635918
Target:  5'- gCGGCAAa-CAucgaGGCCGGUAUCGAc -3'
miRNA:   3'- gGCCGUUgcGUug--CCGGUCGUAGUUc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.