Results 61 - 80 of 181 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26641 | 5' | -54.3 | NC_005808.1 | + | 34940 | 0.67 | 0.602075 |
Target: 5'- aCuGCAGCGCAcgcucgGCGGCCGGCu----- -3' miRNA: 3'- gGcCGUUGCGU------UGCCGGUCGuaguuc -5' |
|||||||
26641 | 5' | -54.3 | NC_005808.1 | + | 37397 | 0.73 | 0.299405 |
Target: 5'- gUCGGCAAUGCGuCGuuCCAGCGUCGAu -3' miRNA: 3'- -GGCCGUUGCGUuGCc-GGUCGUAGUUc -5' |
|||||||
26641 | 5' | -54.3 | NC_005808.1 | + | 22390 | 0.69 | 0.492332 |
Target: 5'- cUCGGC-GCGUucggcACGGCCAGCAgCAu- -3' miRNA: 3'- -GGCCGuUGCGu----UGCCGGUCGUaGUuc -5' |
|||||||
26641 | 5' | -54.3 | NC_005808.1 | + | 32868 | 0.69 | 0.524467 |
Target: 5'- aCCGGCAgacGCGCAGCa-CCAGCGaggugcCGAGg -3' miRNA: 3'- -GGCCGU---UGCGUUGccGGUCGUa-----GUUC- -5' |
|||||||
26641 | 5' | -54.3 | NC_005808.1 | + | 11236 | 0.69 | 0.532083 |
Target: 5'- aCGGCcgaccAGCGCAcgcaacgugcgcagGCGGCCcAGCAgCAGGc -3' miRNA: 3'- gGCCG-----UUGCGU--------------UGCCGG-UCGUaGUUC- -5' |
|||||||
26641 | 5' | -54.3 | NC_005808.1 | + | 39829 | 0.75 | 0.236571 |
Target: 5'- gCGGCcacGCGCAGCGgcGCCAGCAccagCGAGg -3' miRNA: 3'- gGCCGu--UGCGUUGC--CGGUCGUa---GUUC- -5' |
|||||||
26641 | 5' | -54.3 | NC_005808.1 | + | 24859 | 0.71 | 0.38348 |
Target: 5'- aCGGCGACuuCAAC-GCgGGCAUCGAGg -3' miRNA: 3'- gGCCGUUGc-GUUGcCGgUCGUAGUUC- -5' |
|||||||
26641 | 5' | -54.3 | NC_005808.1 | + | 13246 | 0.7 | 0.449958 |
Target: 5'- gCCGGCcaagggcgcccAGCGCGGCcgacacuGGCCGaCAUCGAGg -3' miRNA: 3'- -GGCCG-----------UUGCGUUG-------CCGGUcGUAGUUC- -5' |
|||||||
26641 | 5' | -54.3 | NC_005808.1 | + | 4687 | 0.7 | 0.468321 |
Target: 5'- gCGGCAGCGCGGgccaacauUGGCCuggcugaccugggcGGCAUCGc- -3' miRNA: 3'- gGCCGUUGCGUU--------GCCGG--------------UCGUAGUuc -5' |
|||||||
26641 | 5' | -54.3 | NC_005808.1 | + | 22315 | 0.71 | 0.392705 |
Target: 5'- gCCGGCGaauACGCcaucGCGGCCGacaaccagggccGCGUCAAu -3' miRNA: 3'- -GGCCGU---UGCGu---UGCCGGU------------CGUAGUUc -5' |
|||||||
26641 | 5' | -54.3 | NC_005808.1 | + | 28637 | 0.76 | 0.195131 |
Target: 5'- gCCGGUGGCcgacgugcgcgccGCGAUGGCCGGCGgccgCAAGg -3' miRNA: 3'- -GGCCGUUG-------------CGUUGCCGGUCGUa---GUUC- -5' |
|||||||
26641 | 5' | -54.3 | NC_005808.1 | + | 8454 | 0.76 | 0.20668 |
Target: 5'- aCUGGCuACGCAGCcagcgcgaGGCCGGguUCGAGc -3' miRNA: 3'- -GGCCGuUGCGUUG--------CCGGUCguAGUUC- -5' |
|||||||
26641 | 5' | -54.3 | NC_005808.1 | + | 3945 | 0.67 | 0.613342 |
Target: 5'- gCGGCGACgGCAgcGCGGCCuacAGCGaCGGc -3' miRNA: 3'- gGCCGUUG-CGU--UGCCGG---UCGUaGUUc -5' |
|||||||
26641 | 5' | -54.3 | NC_005808.1 | + | 9442 | 0.67 | 0.647206 |
Target: 5'- gUGGCugcacAAUGCAcGCGGCC-GCAUCAu- -3' miRNA: 3'- gGCCG-----UUGCGU-UGCCGGuCGUAGUuc -5' |
|||||||
26641 | 5' | -54.3 | NC_005808.1 | + | 13575 | 0.66 | 0.669727 |
Target: 5'- aCGGCAAaccgcuuaccuCGCccaaaggcGCGGUCGGCAUCGc- -3' miRNA: 3'- gGCCGUU-----------GCGu-------UGCCGGUCGUAGUuc -5' |
|||||||
26641 | 5' | -54.3 | NC_005808.1 | + | 5654 | 0.66 | 0.680938 |
Target: 5'- -aGGCGgacaucgacACgGUGGCGGCCAGCGUUg-- -3' miRNA: 3'- ggCCGU---------UG-CGUUGCCGGUCGUAGuuc -5' |
|||||||
26641 | 5' | -54.3 | NC_005808.1 | + | 35238 | 0.67 | 0.65848 |
Target: 5'- aCCGG-AugGC--CGGCCAGCAguUCGGc -3' miRNA: 3'- -GGCCgUugCGuuGCCGGUCGU--AGUUc -5' |
|||||||
26641 | 5' | -54.3 | NC_005808.1 | + | 15025 | 0.68 | 0.590834 |
Target: 5'- aCCGGCGACuuCAAC-GCgAGCAUCGc- -3' miRNA: 3'- -GGCCGUUGc-GUUGcCGgUCGUAGUuc -5' |
|||||||
26641 | 5' | -54.3 | NC_005808.1 | + | 9854 | 0.67 | 0.624627 |
Target: 5'- uUCGGCGuGCGCGACcuGGCC-GCGUgGAa -3' miRNA: 3'- -GGCCGU-UGCGUUG--CCGGuCGUAgUUc -5' |
|||||||
26641 | 5' | -54.3 | NC_005808.1 | + | 17682 | 0.67 | 0.635918 |
Target: 5'- gCGGCAAa-CAucgaGGCCGGUAUCGAc -3' miRNA: 3'- gGCCGUUgcGUug--CCGGUCGUAGUUc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home