miRNA display CGI


Results 41 - 60 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26641 5' -54.3 NC_005808.1 + 8454 0.76 0.20668
Target:  5'- aCUGGCuACGCAGCcagcgcgaGGCCGGguUCGAGc -3'
miRNA:   3'- -GGCCGuUGCGUUG--------CCGGUCguAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 9159 0.69 0.513661
Target:  5'- aCCGGCAagaACgGCcucGCGGCCAGUGagGGGa -3'
miRNA:   3'- -GGCCGU---UG-CGu--UGCCGGUCGUagUUC- -5'
26641 5' -54.3 NC_005808.1 + 3945 0.67 0.613342
Target:  5'- gCGGCGACgGCAgcGCGGCCuacAGCGaCGGc -3'
miRNA:   3'- gGCCGUUG-CGU--UGCCGG---UCGUaGUUc -5'
26641 5' -54.3 NC_005808.1 + 34940 0.67 0.602075
Target:  5'- aCuGCAGCGCAcgcucgGCGGCCGGCu----- -3'
miRNA:   3'- gGcCGUUGCGU------UGCCGGUCGuaguuc -5'
26641 5' -54.3 NC_005808.1 + 33790 0.69 0.502947
Target:  5'- gCGGUAGCGUu-CGGCCuuGGCGUCc-- -3'
miRNA:   3'- gGCCGUUGCGuuGCCGG--UCGUAGuuc -5'
26641 5' -54.3 NC_005808.1 + 16132 0.73 0.315012
Target:  5'- aCGGCGccgcGCGCGGCGGCCAcguGCG-CGAa -3'
miRNA:   3'- gGCCGU----UGCGUUGCCGGU---CGUaGUUc -5'
26641 5' -54.3 NC_005808.1 + 28637 0.76 0.195131
Target:  5'- gCCGGUGGCcgacgugcgcgccGCGAUGGCCGGCGgccgCAAGg -3'
miRNA:   3'- -GGCCGUUG-------------CGUUGCCGGUCGUa---GUUC- -5'
26641 5' -54.3 NC_005808.1 + 23518 0.78 0.156175
Target:  5'- gCCGGCGuguacGCGCGAaccauccgcauccCGGCCGGCGUCGc- -3'
miRNA:   3'- -GGCCGU-----UGCGUU-------------GCCGGUCGUAGUuc -5'
26641 5' -54.3 NC_005808.1 + 22888 0.71 0.391776
Target:  5'- gUCGGCAGCGCGGCgaagucgGGCCAGUccggCAc- -3'
miRNA:   3'- -GGCCGUUGCGUUG-------CCGGUCGua--GUuc -5'
26641 5' -54.3 NC_005808.1 + 12348 0.7 0.450967
Target:  5'- gCCGGC-ACGCug-GGCCAGCAacccgccCAGGa -3'
miRNA:   3'- -GGCCGuUGCGuugCCGGUCGUa------GUUC- -5'
26641 5' -54.3 NC_005808.1 + 19538 0.7 0.440925
Target:  5'- aCCGGCAccugGCGCAagcugaacuAUGGCguGCAgccCGAGa -3'
miRNA:   3'- -GGCCGU----UGCGU---------UGCCGguCGUa--GUUC- -5'
26641 5' -54.3 NC_005808.1 + 25382 0.71 0.38348
Target:  5'- cCCGGCGACG-AGC-GCCGGUggCAGGg -3'
miRNA:   3'- -GGCCGUUGCgUUGcCGGUCGuaGUUC- -5'
26641 5' -54.3 NC_005808.1 + 15540 0.75 0.228467
Target:  5'- gUGGCGAUGCAAcuggacggcagcuuCGGCCAagggcGCGUCAAGa -3'
miRNA:   3'- gGCCGUUGCGUU--------------GCCGGU-----CGUAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 37225 0.69 0.535359
Target:  5'- aUGGCGGCGUGGgcgaGGUCGGUAUCGAc -3'
miRNA:   3'- gGCCGUUGCGUUg---CCGGUCGUAGUUc -5'
26641 5' -54.3 NC_005808.1 + 41397 0.69 0.535359
Target:  5'- uCCGGCgAGCGCcgguauuccCGGCCAGCGa---- -3'
miRNA:   3'- -GGCCG-UUGCGuu-------GCCGGUCGUaguuc -5'
26641 5' -54.3 NC_005808.1 + 30191 0.69 0.491276
Target:  5'- gCCGGCGGCGUGuucuggcGCGGCCu-CAUCGc- -3'
miRNA:   3'- -GGCCGUUGCGU-------UGCCGGucGUAGUuc -5'
26641 5' -54.3 NC_005808.1 + 25414 0.68 0.579631
Target:  5'- gCCGGCuAUGCGAacUGGCCGGCcUgGAc -3'
miRNA:   3'- -GGCCGuUGCGUU--GCCGGUCGuAgUUc -5'
26641 5' -54.3 NC_005808.1 + 19351 0.66 0.714228
Target:  5'- cCCaGGCGaccACGCuguucuACGGCgauucCAGCAUCGAc -3'
miRNA:   3'- -GG-CCGU---UGCGu-----UGCCG-----GUCGUAGUUc -5'
26641 5' -54.3 NC_005808.1 + 8783 0.67 0.613342
Target:  5'- cCCGGCucaagguGCGCGAcauccgaccCGGCCAGUA-CAc- -3'
miRNA:   3'- -GGCCGu------UGCGUU---------GCCGGUCGUaGUuc -5'
26641 5' -54.3 NC_005808.1 + 12257 0.68 0.579631
Target:  5'- -aGGCAGCGCG--GGCCGGUuUCGu- -3'
miRNA:   3'- ggCCGUUGCGUugCCGGUCGuAGUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.