Results 21 - 40 of 181 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26641 | 5' | -54.3 | NC_005808.1 | + | 22315 | 0.71 | 0.392705 |
Target: 5'- gCCGGCGaauACGCcaucGCGGCCGacaaccagggccGCGUCAAu -3' miRNA: 3'- -GGCCGU---UGCGu---UGCCGGU------------CGUAGUUc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 25382 | 0.71 | 0.38348 |
Target: 5'- cCCGGCGACG-AGC-GCCGGUggCAGGg -3' miRNA: 3'- -GGCCGUUGCgUUGcCGGUCGuaGUUC- -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 39829 | 0.75 | 0.236571 |
Target: 5'- gCGGCcacGCGCAGCGgcGCCAGCAccagCGAGg -3' miRNA: 3'- gGCCGu--UGCGUUGC--CGGUCGUa---GUUC- -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 253 | 0.78 | 0.143883 |
Target: 5'- cCCGGCAGCGUGACGGugcCCAGCGacacCGGGg -3' miRNA: 3'- -GGCCGUUGCGUUGCC---GGUCGUa---GUUC- -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 11631 | 0.69 | 0.481821 |
Target: 5'- gCGGCAugGCuucgaugaccGGCGGgCAGUccuAUCAGGa -3' miRNA: 3'- gGCCGUugCG----------UUGCCgGUCG---UAGUUC- -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 8516 | 0.71 | 0.421229 |
Target: 5'- aCGGUucgaucuGCGCAAgGGCCaaAGCcUCAAGg -3' miRNA: 3'- gGCCGu------UGCGUUgCCGG--UCGuAGUUC- -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 28957 | 0.72 | 0.348046 |
Target: 5'- gUCGGCGACggccaGCAACuacGCCAGCAgCGAGg -3' miRNA: 3'- -GGCCGUUG-----CGUUGc--CGGUCGUaGUUC- -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 32606 | 0.82 | 0.078302 |
Target: 5'- gCCGGCGGCaGCAuccUGGCCGGCAUCAc- -3' miRNA: 3'- -GGCCGUUG-CGUu--GCCGGUCGUAGUuc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 31587 | 0.71 | 0.418321 |
Target: 5'- aCGGCAACaCAGCGaggcccagcagcacGCCGGCggCAAGg -3' miRNA: 3'- gGCCGUUGcGUUGC--------------CGGUCGuaGUUC- -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 21403 | 0.85 | 0.047236 |
Target: 5'- uUGGCAaccuggGCGCggUGGCCGGCAUCAAGc -3' miRNA: 3'- gGCCGU------UGCGuuGCCGGUCGUAGUUC- -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 4336 | 0.72 | 0.356681 |
Target: 5'- aCGGCcaucaccaugccGGCGCuGACGGCCGGCAcCGAc -3' miRNA: 3'- gGCCG------------UUGCG-UUGCCGGUCGUaGUUc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 10595 | 0.71 | 0.392705 |
Target: 5'- gUGGCGGCGgaaagcguggcCGGCGGUCAGCAguucgaUCAAGa -3' miRNA: 3'- gGCCGUUGC-----------GUUGCCGGUCGU------AGUUC- -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 37397 | 0.73 | 0.299405 |
Target: 5'- gUCGGCAAUGCGuCGuuCCAGCGUCGAu -3' miRNA: 3'- -GGCCGUUGCGUuGCc-GGUCGUAGUUc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 37432 | 0.74 | 0.270001 |
Target: 5'- cCCaGCAguucGCGCAGuuCGGCCGGCAggUCGGGg -3' miRNA: 3'- -GGcCGU----UGCGUU--GCCGGUCGU--AGUUC- -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 12629 | 0.76 | 0.212385 |
Target: 5'- gCCGcGCAGCGCGA-GGCCGGCAagAAa -3' miRNA: 3'- -GGC-CGUUGCGUUgCCGGUCGUagUUc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 23518 | 0.78 | 0.156175 |
Target: 5'- gCCGGCGuguacGCGCGAaccauccgcauccCGGCCGGCGUCGc- -3' miRNA: 3'- -GGCCGU-----UGCGUU-------------GCCGGUCGUAGUuc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 32190 | 0.69 | 0.502947 |
Target: 5'- uUCGGgGGCgucgaggucgGCAGCGGCCagGGCGUUGAGc -3' miRNA: 3'- -GGCCgUUG----------CGUUGCCGG--UCGUAGUUC- -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 30191 | 0.69 | 0.491276 |
Target: 5'- gCCGGCGGCGUGuucuggcGCGGCCu-CAUCGc- -3' miRNA: 3'- -GGCCGUUGCGU-------UGCCGGucGUAGUuc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 4687 | 0.7 | 0.468321 |
Target: 5'- gCGGCAGCGCGGgccaacauUGGCCuggcugaccugggcGGCAUCGc- -3' miRNA: 3'- gGCCGUUGCGUU--------GCCGG--------------UCGUAGUuc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 19538 | 0.7 | 0.440925 |
Target: 5'- aCCGGCAccugGCGCAagcugaacuAUGGCguGCAgccCGAGa -3' miRNA: 3'- -GGCCGU----UGCGU---------UGCCGguCGUa--GUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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