miRNA display CGI


Results 21 - 40 of 181 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26641 5' -54.3 NC_005808.1 + 5273 0.66 0.680938
Target:  5'- aCCGuguugauguucGCGGCGUuguCGGCCacGGCGUCGAu -3'
miRNA:   3'- -GGC-----------CGUUGCGuu-GCCGG--UCGUAGUUc -5'
26641 5' -54.3 NC_005808.1 + 5654 0.66 0.680938
Target:  5'- -aGGCGgacaucgacACgGUGGCGGCCAGCGUUg-- -3'
miRNA:   3'- ggCCGU---------UG-CGUUGCCGGUCGUAGuuc -5'
26641 5' -54.3 NC_005808.1 + 5934 0.7 0.450967
Target:  5'- cCUGGUugucauucAGCGCAACGGuguaguccguacCCAGgGUCAAGg -3'
miRNA:   3'- -GGCCG--------UUGCGUUGCC------------GGUCgUAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 6379 0.69 0.524467
Target:  5'- gUCGGCAaucagGCGCAGgcCGGCCGGCccgguguaGUCGc- -3'
miRNA:   3'- -GGCCGU-----UGCGUU--GCCGGUCG--------UAGUuc -5'
26641 5' -54.3 NC_005808.1 + 7199 0.66 0.669727
Target:  5'- gCCGGgaCAGCGCGauguccACGGC-AGCAUCu-- -3'
miRNA:   3'- -GGCC--GUUGCGU------UGCCGgUCGUAGuuc -5'
26641 5' -54.3 NC_005808.1 + 7246 0.66 0.669727
Target:  5'- cCCGGCuGCGuCAGgGcGUCAGCgcGUCGGGc -3'
miRNA:   3'- -GGCCGuUGC-GUUgC-CGGUCG--UAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 7321 0.66 0.7032
Target:  5'- aUGGUcugcgAACGCAGCaGCCgguuGGCGUCGAu -3'
miRNA:   3'- gGCCG-----UUGCGUUGcCGG----UCGUAGUUc -5'
26641 5' -54.3 NC_005808.1 + 7684 0.71 0.411583
Target:  5'- uUGGCGGCGaucuGCGGCCGGUAgcccUCGAa -3'
miRNA:   3'- gGCCGUUGCgu--UGCCGGUCGU----AGUUc -5'
26641 5' -54.3 NC_005808.1 + 8115 0.7 0.461134
Target:  5'- cCCuGCAcCGC-GCGGCCGGCGUUg-- -3'
miRNA:   3'- -GGcCGUuGCGuUGCCGGUCGUAGuuc -5'
26641 5' -54.3 NC_005808.1 + 8454 0.76 0.20668
Target:  5'- aCUGGCuACGCAGCcagcgcgaGGCCGGguUCGAGc -3'
miRNA:   3'- -GGCCGuUGCGUUG--------CCGGUCguAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 8516 0.71 0.421229
Target:  5'- aCGGUucgaucuGCGCAAgGGCCaaAGCcUCAAGg -3'
miRNA:   3'- gGCCGu------UGCGUUgCCGG--UCGuAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 8651 0.69 0.513661
Target:  5'- gCCGGCcuucauCGC-GCGGUCGGCAUUg-- -3'
miRNA:   3'- -GGCCGuu----GCGuUGCCGGUCGUAGuuc -5'
26641 5' -54.3 NC_005808.1 + 8698 0.72 0.33956
Target:  5'- gCCGGCGAccucgccacCGCAGCGGCCgagaAGCG-CAAc -3'
miRNA:   3'- -GGCCGUU---------GCGUUGCCGG----UCGUaGUUc -5'
26641 5' -54.3 NC_005808.1 + 8783 0.67 0.613342
Target:  5'- cCCGGCucaagguGCGCGAcauccgaccCGGCCAGUA-CAc- -3'
miRNA:   3'- -GGCCGu------UGCGUU---------GCCGGUCGUaGUuc -5'
26641 5' -54.3 NC_005808.1 + 8912 0.69 0.492332
Target:  5'- aUCGGCGGCGCGcucgAUGGCUucgGGCGUgGAc -3'
miRNA:   3'- -GGCCGUUGCGU----UGCCGG---UCGUAgUUc -5'
26641 5' -54.3 NC_005808.1 + 9159 0.69 0.513661
Target:  5'- aCCGGCAagaACgGCcucGCGGCCAGUGagGGGa -3'
miRNA:   3'- -GGCCGU---UG-CGu--UGCCGGUCGUagUUC- -5'
26641 5' -54.3 NC_005808.1 + 9208 0.66 0.685409
Target:  5'- cUCGGCGGCGCGGCGcacguucugcggcgcGCCcGGCggCAGu -3'
miRNA:   3'- -GGCCGUUGCGUUGC---------------CGG-UCGuaGUUc -5'
26641 5' -54.3 NC_005808.1 + 9318 0.72 0.34719
Target:  5'- cCUGGCGGCGCAcgucggcGCGGCgGGCGgcggCAu- -3'
miRNA:   3'- -GGCCGUUGCGU-------UGCCGgUCGUa---GUuc -5'
26641 5' -54.3 NC_005808.1 + 9442 0.67 0.647206
Target:  5'- gUGGCugcacAAUGCAcGCGGCC-GCAUCAu- -3'
miRNA:   3'- gGCCG-----UUGCGU-UGCCGGuCGUAGUuc -5'
26641 5' -54.3 NC_005808.1 + 9854 0.67 0.624627
Target:  5'- uUCGGCGuGCGCGACcuGGCC-GCGUgGAa -3'
miRNA:   3'- -GGCCGU-UGCGUUG--CCGGuCGUAgUUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.