miRNA display CGI


Results 21 - 40 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26641 5' -54.3 NC_005808.1 + 37225 0.69 0.535359
Target:  5'- aUGGCGGCGUGGgcgaGGUCGGUAUCGAc -3'
miRNA:   3'- gGCCGUUGCGUUg---CCGGUCGUAGUUc -5'
26641 5' -54.3 NC_005808.1 + 36153 0.67 0.613342
Target:  5'- aCGGCGACGCcuucGCGGgCGGUgguGUCGc- -3'
miRNA:   3'- gGCCGUUGCGu---UGCCgGUCG---UAGUuc -5'
26641 5' -54.3 NC_005808.1 + 36053 0.7 0.47142
Target:  5'- gCgGGCugcuACGuCAAC-GCCAGCAUCGAa -3'
miRNA:   3'- -GgCCGu---UGC-GUUGcCGGUCGUAGUUc -5'
26641 5' -54.3 NC_005808.1 + 35262 0.66 0.669727
Target:  5'- -aGGCcGCGCucaaGGCCAuGCGucUCAAGg -3'
miRNA:   3'- ggCCGuUGCGuug-CCGGU-CGU--AGUUC- -5'
26641 5' -54.3 NC_005808.1 + 35238 0.67 0.65848
Target:  5'- aCCGG-AugGC--CGGCCAGCAguUCGGc -3'
miRNA:   3'- -GGCCgUugCGuuGCCGGUCGU--AGUUc -5'
26641 5' -54.3 NC_005808.1 + 35212 0.67 0.613342
Target:  5'- uUCGGCcuucGCGCgAAUGGCCuuGCAcCAGGa -3'
miRNA:   3'- -GGCCGu---UGCG-UUGCCGGu-CGUaGUUC- -5'
26641 5' -54.3 NC_005808.1 + 34940 0.67 0.602075
Target:  5'- aCuGCAGCGCAcgcucgGCGGCCGGCu----- -3'
miRNA:   3'- gGcCGUUGCGU------UGCCGGUCGuaguuc -5'
26641 5' -54.3 NC_005808.1 + 34551 0.69 0.481821
Target:  5'- aUGGUcgaGCAGCGGUUgAGCGUCGAGg -3'
miRNA:   3'- gGCCGuugCGUUGCCGG-UCGUAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 34224 0.68 0.557369
Target:  5'- gCGGaacauCGGCGCGAU-GUCGGCGUCGAGg -3'
miRNA:   3'- gGCC-----GUUGCGUUGcCGGUCGUAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 33927 0.66 0.669727
Target:  5'- cCCGGCgGGCGCGGCG-CUAcCGUCAAc -3'
miRNA:   3'- -GGCCG-UUGCGUUGCcGGUcGUAGUUc -5'
26641 5' -54.3 NC_005808.1 + 33790 0.69 0.502947
Target:  5'- gCGGUAGCGUu-CGGCCuuGGCGUCc-- -3'
miRNA:   3'- gGCCGUUGCGuuGCCGG--UCGUAGuuc -5'
26641 5' -54.3 NC_005808.1 + 33085 0.68 0.568473
Target:  5'- gCaGCGACGCGGCGGCCuaCAUCc-- -3'
miRNA:   3'- gGcCGUUGCGUUGCCGGucGUAGuuc -5'
26641 5' -54.3 NC_005808.1 + 32868 0.69 0.524467
Target:  5'- aCCGGCAgacGCGCAGCa-CCAGCGaggugcCGAGg -3'
miRNA:   3'- -GGCCGU---UGCGUUGccGGUCGUa-----GUUC- -5'
26641 5' -54.3 NC_005808.1 + 32846 0.71 0.421229
Target:  5'- aCGGCuuCGCcuggccgcaGACGGUCGGCGcCGAGa -3'
miRNA:   3'- gGCCGuuGCG---------UUGCCGGUCGUaGUUC- -5'
26641 5' -54.3 NC_005808.1 + 32680 0.68 0.568473
Target:  5'- gCGGCGuCGCGGCccuugacgcgGGCCAGCuugGUCAc- -3'
miRNA:   3'- gGCCGUuGCGUUG----------CCGGUCG---UAGUuc -5'
26641 5' -54.3 NC_005808.1 + 32606 0.82 0.078302
Target:  5'- gCCGGCGGCaGCAuccUGGCCGGCAUCAc- -3'
miRNA:   3'- -GGCCGUUG-CGUu--GCCGGUCGUAGUuc -5'
26641 5' -54.3 NC_005808.1 + 32589 0.69 0.492332
Target:  5'- aCCGcCGACGCugugaccaAGCuGGCCcGCGUCAAGg -3'
miRNA:   3'- -GGCcGUUGCG--------UUG-CCGGuCGUAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 32416 0.66 0.714228
Target:  5'- gCGGCGAcCGCAGCgaccuGGgCGGCgguuGUCGGGa -3'
miRNA:   3'- gGCCGUU-GCGUUG-----CCgGUCG----UAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 32190 0.69 0.502947
Target:  5'- uUCGGgGGCgucgaggucgGCAGCGGCCagGGCGUUGAGc -3'
miRNA:   3'- -GGCCgUUG----------CGUUGCCGG--UCGUAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 31587 0.71 0.418321
Target:  5'- aCGGCAACaCAGCGaggcccagcagcacGCCGGCggCAAGg -3'
miRNA:   3'- gGCCGUUGcGUUGC--------------CGGUCGuaGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.