miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26641 5' -54.3 NC_005808.1 + 42428 0.67 0.613342
Target:  5'- gCCGGCAuucugcGCGCGGCaGCUugGGCAcUCGAu -3'
miRNA:   3'- -GGCCGU------UGCGUUGcCGG--UCGU-AGUUc -5'
26641 5' -54.3 NC_005808.1 + 42417 0.66 0.685409
Target:  5'- gCCGGCGguagcgaauccccagGCGCuugaGGCaCGGCGUCcAGu -3'
miRNA:   3'- -GGCCGU---------------UGCGuug-CCG-GUCGUAGuUC- -5'
26641 5' -54.3 NC_005808.1 + 42144 0.66 0.714228
Target:  5'- gCGGUggUGC-GCGGCgAGCAg-AAGg -3'
miRNA:   3'- gGCCGuuGCGuUGCCGgUCGUagUUC- -5'
26641 5' -54.3 NC_005808.1 + 41812 0.71 0.402073
Target:  5'- aCGGCGauuGCGCAGCGGCCcgaucugaccGGCAa---- -3'
miRNA:   3'- gGCCGU---UGCGUUGCCGG----------UCGUaguuc -5'
26641 5' -54.3 NC_005808.1 + 41711 0.73 0.307133
Target:  5'- uCUGGaaCAACGCGGCGGCCcuCGUCGAu -3'
miRNA:   3'- -GGCC--GUUGCGUUGCCGGucGUAGUUc -5'
26641 5' -54.3 NC_005808.1 + 41456 0.69 0.535359
Target:  5'- aCGGCgAGCGCaAACGGCCGcuGC-UCAu- -3'
miRNA:   3'- gGCCG-UUGCG-UUGCCGGU--CGuAGUuc -5'
26641 5' -54.3 NC_005808.1 + 41423 0.66 0.680938
Target:  5'- aCGGCAGCGCGauACGGCU-GUccuUCAc- -3'
miRNA:   3'- gGCCGUUGCGU--UGCCGGuCGu--AGUuc -5'
26641 5' -54.3 NC_005808.1 + 41397 0.69 0.535359
Target:  5'- uCCGGCgAGCGCcgguauuccCGGCCAGCGa---- -3'
miRNA:   3'- -GGCCG-UUGCGuu-------GCCGGUCGUaguuc -5'
26641 5' -54.3 NC_005808.1 + 39862 0.68 0.579631
Target:  5'- cCCGaGCAGCGCcg-GGCCGcGC-UCAAGc -3'
miRNA:   3'- -GGC-CGUUGCGuugCCGGU-CGuAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 39829 0.75 0.236571
Target:  5'- gCGGCcacGCGCAGCGgcGCCAGCAccagCGAGg -3'
miRNA:   3'- gGCCGu--UGCGUUGC--CGGUCGUa---GUUC- -5'
26641 5' -54.3 NC_005808.1 + 39663 0.76 0.190356
Target:  5'- gCCGcGCGACGCgguGugGGCCGGCAUgGGa -3'
miRNA:   3'- -GGC-CGUUGCG---UugCCGGUCGUAgUUc -5'
26641 5' -54.3 NC_005808.1 + 38964 0.67 0.613342
Target:  5'- aCGGCGACGCGcugccccauGCGGC--GCAUCc-- -3'
miRNA:   3'- gGCCGUUGCGU---------UGCCGguCGUAGuuc -5'
26641 5' -54.3 NC_005808.1 + 38616 0.75 0.218225
Target:  5'- gCGGCGA-GCGGCaGGCCAGCGgccCAGGg -3'
miRNA:   3'- gGCCGUUgCGUUG-CCGGUCGUa--GUUC- -5'
26641 5' -54.3 NC_005808.1 + 38033 0.7 0.440925
Target:  5'- aCCGaGCAGCGCcuCGGCgacuuCGGCcUCAAGc -3'
miRNA:   3'- -GGC-CGUUGCGuuGCCG-----GUCGuAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 38023 0.74 0.277127
Target:  5'- -gGGCcACGCugcguCGGCCAucGCGUCAAGg -3'
miRNA:   3'- ggCCGuUGCGuu---GCCGGU--CGUAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 37961 0.71 0.411583
Target:  5'- aUGGcCGACGCAGCguGGcCCAGCAUCc-- -3'
miRNA:   3'- gGCC-GUUGCGUUG--CC-GGUCGUAGuuc -5'
26641 5' -54.3 NC_005808.1 + 37834 0.67 0.60996
Target:  5'- gCCGGCGccgucgucgaauucACGgaaAGCGGCCAGCuucCAAu -3'
miRNA:   3'- -GGCCGU--------------UGCg--UUGCCGGUCGua-GUUc -5'
26641 5' -54.3 NC_005808.1 + 37641 0.71 0.392705
Target:  5'- aCCaGCAGCGCGauacGCGGCU-GCAUCGu- -3'
miRNA:   3'- -GGcCGUUGCGU----UGCCGGuCGUAGUuc -5'
26641 5' -54.3 NC_005808.1 + 37432 0.74 0.270001
Target:  5'- cCCaGCAguucGCGCAGuuCGGCCGGCAggUCGGGg -3'
miRNA:   3'- -GGcCGU----UGCGUU--GCCGGUCGU--AGUUC- -5'
26641 5' -54.3 NC_005808.1 + 37397 0.73 0.299405
Target:  5'- gUCGGCAAUGCGuCGuuCCAGCGUCGAu -3'
miRNA:   3'- -GGCCGUUGCGUuGCc-GGUCGUAGUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.