miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26641 5' -54.3 NC_005808.1 + 253 0.78 0.143883
Target:  5'- cCCGGCAGCGUGACGGugcCCAGCGacacCGGGg -3'
miRNA:   3'- -GGCCGUUGCGUUGCC---GGUCGUa---GUUC- -5'
26641 5' -54.3 NC_005808.1 + 449 0.66 0.7032
Target:  5'- -gGGCuGCuGC-GCGGCCAGCuugCGGGc -3'
miRNA:   3'- ggCCGuUG-CGuUGCCGGUCGua-GUUC- -5'
26641 5' -54.3 NC_005808.1 + 618 0.72 0.365467
Target:  5'- gCCaGCAGCGCcguggacacGGCGuCCGGCGUCGAGu -3'
miRNA:   3'- -GGcCGUUGCG---------UUGCcGGUCGUAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 687 0.68 0.546329
Target:  5'- aCGGCGGCGC--CGGCCgGGCcgccCAAGa -3'
miRNA:   3'- gGCCGUUGCGuuGCCGG-UCGua--GUUC- -5'
26641 5' -54.3 NC_005808.1 + 803 0.7 0.440925
Target:  5'- uCCGGCGACGCGccGCGcCCAGCccuugccgaacGUCGGc -3'
miRNA:   3'- -GGCCGUUGCGU--UGCcGGUCG-----------UAGUUc -5'
26641 5' -54.3 NC_005808.1 + 994 0.66 0.680938
Target:  5'- cCUGGCggUGCcgUGGUucaccgCAGCGUCGAa -3'
miRNA:   3'- -GGCCGuuGCGuuGCCG------GUCGUAGUUc -5'
26641 5' -54.3 NC_005808.1 + 1043 0.66 0.690986
Target:  5'- gCCGGCGGCaGCAugucgccGCGaaCCGGCGUCcAGu -3'
miRNA:   3'- -GGCCGUUG-CGU-------UGCc-GGUCGUAGuUC- -5'
26641 5' -54.3 NC_005808.1 + 1351 0.67 0.647206
Target:  5'- gCGGCG--GUGugGGCgGGCAUCAc- -3'
miRNA:   3'- gGCCGUugCGUugCCGgUCGUAGUuc -5'
26641 5' -54.3 NC_005808.1 + 2411 0.69 0.535359
Target:  5'- gCGGCAagcguagguguACgGCAGCaGGCCGGCcUCGAa -3'
miRNA:   3'- gGCCGU-----------UG-CGUUG-CCGGUCGuAGUUc -5'
26641 5' -54.3 NC_005808.1 + 2573 0.68 0.584107
Target:  5'- gCCGGCuuugaguucagcuUGCAA-GGCCAGCAgguuggCGAGg -3'
miRNA:   3'- -GGCCGuu-----------GCGUUgCCGGUCGUa-----GUUC- -5'
26641 5' -54.3 NC_005808.1 + 3945 0.67 0.613342
Target:  5'- gCGGCGACgGCAgcGCGGCCuacAGCGaCGGc -3'
miRNA:   3'- gGCCGUUG-CGU--UGCCGG---UCGUaGUUc -5'
26641 5' -54.3 NC_005808.1 + 4083 0.67 0.65848
Target:  5'- gCGGCAugACGCuggUGGCCGGCG-CGu- -3'
miRNA:   3'- gGCCGU--UGCGuu-GCCGGUCGUaGUuc -5'
26641 5' -54.3 NC_005808.1 + 4275 0.76 0.195668
Target:  5'- gCCGGCAugGUGAUGGCC-GUGUCGGc -3'
miRNA:   3'- -GGCCGUugCGUUGCCGGuCGUAGUUc -5'
26641 5' -54.3 NC_005808.1 + 4336 0.72 0.356681
Target:  5'- aCGGCcaucaccaugccGGCGCuGACGGCCGGCAcCGAc -3'
miRNA:   3'- gGCCG------------UUGCG-UUGCCGGUCGUaGUUc -5'
26641 5' -54.3 NC_005808.1 + 4414 1.12 0.000547
Target:  5'- aCCGGCAACGCAACGGCCAGCAUCAAGg -3'
miRNA:   3'- -GGCCGUUGCGUUGCCGGUCGUAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 4687 0.7 0.468321
Target:  5'- gCGGCAGCGCGGgccaacauUGGCCuggcugaccugggcGGCAUCGc- -3'
miRNA:   3'- gGCCGUUGCGUU--------GCCGG--------------UCGUAGUuc -5'
26641 5' -54.3 NC_005808.1 + 4688 0.69 0.492332
Target:  5'- gCCGGaUAGCGCGGCgagaauGGCCGGCAa---- -3'
miRNA:   3'- -GGCC-GUUGCGUUG------CCGGUCGUaguuc -5'
26641 5' -54.3 NC_005808.1 + 4802 0.7 0.431012
Target:  5'- gCCGGCuGGCGCugcgggauuGCuGGCCGGCGaCAGGu -3'
miRNA:   3'- -GGCCG-UUGCGu--------UG-CCGGUCGUaGUUC- -5'
26641 5' -54.3 NC_005808.1 + 4886 0.67 0.635918
Target:  5'- aCGGCGACcuguCGcCGGCCAGCAa---- -3'
miRNA:   3'- gGCCGUUGc---GUuGCCGGUCGUaguuc -5'
26641 5' -54.3 NC_005808.1 + 4925 0.69 0.480776
Target:  5'- gUCGGCAGCgaugcccGCGACGGUCuGCAcgucugCGAGg -3'
miRNA:   3'- -GGCCGUUG-------CGUUGCCGGuCGUa-----GUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.