miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26641 5' -54.3 NC_005808.1 + 4414 1.12 0.000547
Target:  5'- aCCGGCAACGCAACGGCCAGCAUCAAGg -3'
miRNA:   3'- -GGCCGUUGCGUUGCCGGUCGUAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 21403 0.85 0.047236
Target:  5'- uUGGCAaccuggGCGCggUGGCCGGCAUCAAGc -3'
miRNA:   3'- gGCCGU------UGCGuuGCCGGUCGUAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 32606 0.82 0.078302
Target:  5'- gCCGGCGGCaGCAuccUGGCCGGCAUCAc- -3'
miRNA:   3'- -GGCCGUUG-CGUu--GCCGGUCGUAGUuc -5'
26641 5' -54.3 NC_005808.1 + 19632 0.78 0.139853
Target:  5'- gCgGGCcGCGaCAuCGGCCAGCGUCGGGu -3'
miRNA:   3'- -GgCCGuUGC-GUuGCCGGUCGUAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 253 0.78 0.143883
Target:  5'- cCCGGCAGCGUGACGGugcCCAGCGacacCGGGg -3'
miRNA:   3'- -GGCCGUUGCGUUGCC---GGUCGUa---GUUC- -5'
26641 5' -54.3 NC_005808.1 + 23518 0.78 0.156175
Target:  5'- gCCGGCGuguacGCGCGAaccauccgcauccCGGCCGGCGUCGc- -3'
miRNA:   3'- -GGCCGU-----UGCGUU-------------GCCGGUCGUAGUuc -5'
26641 5' -54.3 NC_005808.1 + 39663 0.76 0.190356
Target:  5'- gCCGcGCGACGCgguGugGGCCGGCAUgGGa -3'
miRNA:   3'- -GGC-CGUUGCG---UugCCGGUCGUAgUUc -5'
26641 5' -54.3 NC_005808.1 + 28637 0.76 0.195131
Target:  5'- gCCGGUGGCcgacgugcgcgccGCGAUGGCCGGCGgccgCAAGg -3'
miRNA:   3'- -GGCCGUUG-------------CGUUGCCGGUCGUa---GUUC- -5'
26641 5' -54.3 NC_005808.1 + 4275 0.76 0.195668
Target:  5'- gCCGGCAugGUGAUGGCC-GUGUCGGc -3'
miRNA:   3'- -GGCCGUugCGUUGCCGGuCGUAGUUc -5'
26641 5' -54.3 NC_005808.1 + 8454 0.76 0.20668
Target:  5'- aCUGGCuACGCAGCcagcgcgaGGCCGGguUCGAGc -3'
miRNA:   3'- -GGCCGuUGCGUUG--------CCGGUCguAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 28403 0.76 0.212385
Target:  5'- gCCGGCGGCGCGGCG-CCAGUAg---- -3'
miRNA:   3'- -GGCCGUUGCGUUGCcGGUCGUaguuc -5'
26641 5' -54.3 NC_005808.1 + 12629 0.76 0.212385
Target:  5'- gCCGcGCAGCGCGA-GGCCGGCAagAAa -3'
miRNA:   3'- -GGC-CGUUGCGUUgCCGGUCGUagUUc -5'
26641 5' -54.3 NC_005808.1 + 38616 0.75 0.218225
Target:  5'- gCGGCGA-GCGGCaGGCCAGCGgccCAGGg -3'
miRNA:   3'- gGCCGUUgCGUUG-CCGGUCGUa--GUUC- -5'
26641 5' -54.3 NC_005808.1 + 15540 0.75 0.228467
Target:  5'- gUGGCGAUGCAAcuggacggcagcuuCGGCCAagggcGCGUCAAGa -3'
miRNA:   3'- gGCCGUUGCGUU--------------GCCGGU-----CGUAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 39829 0.75 0.236571
Target:  5'- gCGGCcacGCGCAGCGgcGCCAGCAccagCGAGg -3'
miRNA:   3'- gGCCGu--UGCGUUGC--CGGUCGUa---GUUC- -5'
26641 5' -54.3 NC_005808.1 + 37432 0.74 0.270001
Target:  5'- cCCaGCAguucGCGCAGuuCGGCCGGCAggUCGGGg -3'
miRNA:   3'- -GGcCGU----UGCGUU--GCCGGUCGU--AGUUC- -5'
26641 5' -54.3 NC_005808.1 + 38023 0.74 0.277127
Target:  5'- -gGGCcACGCugcguCGGCCAucGCGUCAAGg -3'
miRNA:   3'- ggCCGuUGCGuu---GCCGGU--CGUAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 20212 0.73 0.291828
Target:  5'- uUGGCAGCGCccGCGGCCGGCuGUUg-- -3'
miRNA:   3'- gGCCGUUGCGu-UGCCGGUCG-UAGuuc -5'
26641 5' -54.3 NC_005808.1 + 21276 0.73 0.291828
Target:  5'- gUCGGCGuaagugucgGCcCAGCGGUCGGCGUCGAa -3'
miRNA:   3'- -GGCCGU---------UGcGUUGCCGGUCGUAGUUc -5'
26641 5' -54.3 NC_005808.1 + 18344 0.73 0.291828
Target:  5'- aCCGGCc-CGCuGACGGCCGGCAa---- -3'
miRNA:   3'- -GGCCGuuGCG-UUGCCGGUCGUaguuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.