miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26641 5' -54.3 NC_005808.1 + 30299 0.66 0.718616
Target:  5'- uCgGGUAGCGCcccuGCGaGCCGcuuugcguguacuucGCGUCGGGg -3'
miRNA:   3'- -GgCCGUUGCGu---UGC-CGGU---------------CGUAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 20816 0.66 0.714228
Target:  5'- -aGcGCGGCGCAGCGccucuacggcGCCAGCAgCAu- -3'
miRNA:   3'- ggC-CGUUGCGUUGC----------CGGUCGUaGUuc -5'
26641 5' -54.3 NC_005808.1 + 19559 0.66 0.714228
Target:  5'- aCGGUu-CGCAGCGGCCuGCc----- -3'
miRNA:   3'- gGCCGuuGCGUUGCCGGuCGuaguuc -5'
26641 5' -54.3 NC_005808.1 + 12497 0.66 0.714228
Target:  5'- gUCGGCGacaucgacaGCGCcACcaaGGaCGGCAUCAAGg -3'
miRNA:   3'- -GGCCGU---------UGCGuUG---CCgGUCGUAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 11379 0.66 0.714228
Target:  5'- cCCGGCAccucggugGCGaccugAugGGCCAGgGUCu-- -3'
miRNA:   3'- -GGCCGU--------UGCg----UugCCGGUCgUAGuuc -5'
26641 5' -54.3 NC_005808.1 + 32416 0.66 0.714228
Target:  5'- gCGGCGAcCGCAGCgaccuGGgCGGCgguuGUCGGGa -3'
miRNA:   3'- gGCCGUU-GCGUUG-----CCgGUCG----UAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 19351 0.66 0.714228
Target:  5'- cCCaGGCGaccACGCuguucuACGGCgauucCAGCAUCGAc -3'
miRNA:   3'- -GG-CCGU---UGCGu-----UGCCG-----GUCGUAGUUc -5'
26641 5' -54.3 NC_005808.1 + 18471 0.66 0.714228
Target:  5'- gCCGGCGGCGU--CGGCCGauuCGUCc-- -3'
miRNA:   3'- -GGCCGUUGCGuuGCCGGUc--GUAGuuc -5'
26641 5' -54.3 NC_005808.1 + 42144 0.66 0.714228
Target:  5'- gCGGUggUGC-GCGGCgAGCAg-AAGg -3'
miRNA:   3'- gGCCGuuGCGuUGCCGgUCGUagUUC- -5'
26641 5' -54.3 NC_005808.1 + 15594 0.66 0.714228
Target:  5'- gCCGGCAccgUGCAuauCGGCCuGCccAUCAc- -3'
miRNA:   3'- -GGCCGUu--GCGUu--GCCGGuCG--UAGUuc -5'
26641 5' -54.3 NC_005808.1 + 10875 0.66 0.714228
Target:  5'- uUCGGuCGGCGCGAUGcGCgCGGCGUa--- -3'
miRNA:   3'- -GGCC-GUUGCGUUGC-CG-GUCGUAguuc -5'
26641 5' -54.3 NC_005808.1 + 30421 0.66 0.7032
Target:  5'- cUCGGCAugGCGAUGaGCgCGGg--CAGGg -3'
miRNA:   3'- -GGCCGUugCGUUGC-CG-GUCguaGUUC- -5'
26641 5' -54.3 NC_005808.1 + 449 0.66 0.7032
Target:  5'- -gGGCuGCuGC-GCGGCCAGCuugCGGGc -3'
miRNA:   3'- ggCCGuUG-CGuUGCCGGUCGua-GUUC- -5'
26641 5' -54.3 NC_005808.1 + 31093 0.66 0.7032
Target:  5'- cCCGcGCGAuUGCcuCGGCCGGCAa---- -3'
miRNA:   3'- -GGC-CGUU-GCGuuGCCGGUCGUaguuc -5'
26641 5' -54.3 NC_005808.1 + 7321 0.66 0.7032
Target:  5'- aUGGUcugcgAACGCAGCaGCCgguuGGCGUCGAu -3'
miRNA:   3'- gGCCG-----UUGCGUUGcCGG----UCGUAGUUc -5'
26641 5' -54.3 NC_005808.1 + 23532 0.66 0.692099
Target:  5'- uCCaGGCGGCGCAcGCGGUCgauGGCcUCGGc -3'
miRNA:   3'- -GG-CCGUUGCGU-UGCCGG---UCGuAGUUc -5'
26641 5' -54.3 NC_005808.1 + 18171 0.66 0.690986
Target:  5'- aCCGGaCGGCGCGAaggcguccugguuCGcGCCGGCuUCGGc -3'
miRNA:   3'- -GGCC-GUUGCGUU-------------GC-CGGUCGuAGUUc -5'
26641 5' -54.3 NC_005808.1 + 1043 0.66 0.690986
Target:  5'- gCCGGCGGCaGCAugucgccGCGaaCCGGCGUCcAGu -3'
miRNA:   3'- -GGCCGUUG-CGU-------UGCc-GGUCGUAGuUC- -5'
26641 5' -54.3 NC_005808.1 + 42417 0.66 0.685409
Target:  5'- gCCGGCGguagcgaauccccagGCGCuugaGGCaCGGCGUCcAGu -3'
miRNA:   3'- -GGCCGU---------------UGCGuug-CCG-GUCGUAGuUC- -5'
26641 5' -54.3 NC_005808.1 + 9208 0.66 0.685409
Target:  5'- cUCGGCGGCGCGGCGcacguucugcggcgcGCCcGGCggCAGu -3'
miRNA:   3'- -GGCCGUUGCGUUGC---------------CGG-UCGuaGUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.