miRNA display CGI


Results 21 - 40 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26641 5' -54.3 NC_005808.1 + 16440 0.66 0.680938
Target:  5'- gCCGGCGGCGUugaacACGGCgucgUAG-AUCGGGg -3'
miRNA:   3'- -GGCCGUUGCGu----UGCCG----GUCgUAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 994 0.66 0.680938
Target:  5'- cCUGGCggUGCcgUGGUucaccgCAGCGUCGAa -3'
miRNA:   3'- -GGCCGuuGCGuuGCCG------GUCGUAGUUc -5'
26641 5' -54.3 NC_005808.1 + 41423 0.66 0.680938
Target:  5'- aCGGCAGCGCGauACGGCU-GUccuUCAc- -3'
miRNA:   3'- gGCCGUUGCGU--UGCCGGuCGu--AGUuc -5'
26641 5' -54.3 NC_005808.1 + 18321 0.66 0.680938
Target:  5'- aCGGCAguagcgGCGCAGCuuGGUgGGCAUaGGGa -3'
miRNA:   3'- gGCCGU------UGCGUUG--CCGgUCGUAgUUC- -5'
26641 5' -54.3 NC_005808.1 + 5273 0.66 0.680938
Target:  5'- aCCGuguugauguucGCGGCGUuguCGGCCacGGCGUCGAu -3'
miRNA:   3'- -GGC-----------CGUUGCGuu-GCCGG--UCGUAGUUc -5'
26641 5' -54.3 NC_005808.1 + 5654 0.66 0.680938
Target:  5'- -aGGCGgacaucgacACgGUGGCGGCCAGCGUUg-- -3'
miRNA:   3'- ggCCGU---------UG-CGUUGCCGGUCGUAGuuc -5'
26641 5' -54.3 NC_005808.1 + 16774 0.66 0.679819
Target:  5'- aCCGGCGACGUgaaGGCGauggucgccaguuGCCAGUugGUCGc- -3'
miRNA:   3'- -GGCCGUUGCG---UUGC-------------CGGUCG--UAGUuc -5'
26641 5' -54.3 NC_005808.1 + 23282 0.66 0.67085
Target:  5'- gUCGGCGuGCGCcacgaaugccuguuuGCGGCCGGCAcuggcCGGGa -3'
miRNA:   3'- -GGCCGU-UGCGu--------------UGCCGGUCGUa----GUUC- -5'
26641 5' -54.3 NC_005808.1 + 7246 0.66 0.669727
Target:  5'- cCCGGCuGCGuCAGgGcGUCAGCgcGUCGGGc -3'
miRNA:   3'- -GGCCGuUGC-GUUgC-CGGUCG--UAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 33927 0.66 0.669727
Target:  5'- cCCGGCgGGCGCGGCG-CUAcCGUCAAc -3'
miRNA:   3'- -GGCCG-UUGCGUUGCcGGUcGUAGUUc -5'
26641 5' -54.3 NC_005808.1 + 14768 0.66 0.669727
Target:  5'- -gGGCAuggagGCGCAACugcaGGCCgGGCuUCAAGc -3'
miRNA:   3'- ggCCGU-----UGCGUUG----CCGG-UCGuAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 35262 0.66 0.669727
Target:  5'- -aGGCcGCGCucaaGGCCAuGCGucUCAAGg -3'
miRNA:   3'- ggCCGuUGCGuug-CCGGU-CGU--AGUUC- -5'
26641 5' -54.3 NC_005808.1 + 7199 0.66 0.669727
Target:  5'- gCCGGgaCAGCGCGauguccACGGC-AGCAUCu-- -3'
miRNA:   3'- -GGCC--GUUGCGU------UGCCGgUCGUAGuuc -5'
26641 5' -54.3 NC_005808.1 + 27895 0.66 0.669727
Target:  5'- gCGGcCGGCGCcaccGCGGgCAGCGcgcgCGAGg -3'
miRNA:   3'- gGCC-GUUGCGu---UGCCgGUCGUa---GUUC- -5'
26641 5' -54.3 NC_005808.1 + 13575 0.66 0.669727
Target:  5'- aCGGCAAaccgcuuaccuCGCccaaaggcGCGGUCGGCAUCGc- -3'
miRNA:   3'- gGCCGUU-----------GCGu-------UGCCGGUCGUAGUuc -5'
26641 5' -54.3 NC_005808.1 + 12630 0.66 0.668604
Target:  5'- cUCGGCAuCGCuGCuGCCguccuuuGGCGUCGGGu -3'
miRNA:   3'- -GGCCGUuGCGuUGcCGG-------UCGUAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 15948 0.66 0.668604
Target:  5'- gCGGCGccuuCGCGuaGGCCAGUccagaauGUCGAGa -3'
miRNA:   3'- gGCCGUu---GCGUugCCGGUCG-------UAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 14993 0.66 0.666357
Target:  5'- -gGGC-GCGCAGucggcacuugaggcCGGCCAGCAgCAGa -3'
miRNA:   3'- ggCCGuUGCGUU--------------GCCGGUCGUaGUUc -5'
26641 5' -54.3 NC_005808.1 + 35238 0.67 0.65848
Target:  5'- aCCGG-AugGC--CGGCCAGCAguUCGGc -3'
miRNA:   3'- -GGCCgUugCGuuGCCGGUCGU--AGUUc -5'
26641 5' -54.3 NC_005808.1 + 4083 0.67 0.65848
Target:  5'- gCGGCAugACGCuggUGGCCGGCG-CGu- -3'
miRNA:   3'- gGCCGU--UGCGuu-GCCGGUCGUaGUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.