Results 41 - 60 of 181 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26641 | 5' | -54.3 | NC_005808.1 | + | 4083 | 0.67 | 0.65848 |
Target: 5'- gCGGCAugACGCuggUGGCCGGCG-CGu- -3' miRNA: 3'- gGCCGU--UGCGuu-GCCGGUCGUaGUuc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 11669 | 0.67 | 0.647206 |
Target: 5'- gCUGGCAcugcuGCcCGGCGGCCAGCcggCGGc -3' miRNA: 3'- -GGCCGU-----UGcGUUGCCGGUCGua-GUUc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 26854 | 0.67 | 0.647206 |
Target: 5'- gCgGGCGAauuggGUAAUGGUCGGCGgaagCAAGg -3' miRNA: 3'- -GgCCGUUg----CGUUGCCGGUCGUa---GUUC- -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 23707 | 0.67 | 0.647206 |
Target: 5'- gCCGGUAGCGCccaggucGCGGgCCAGUGccUCGGu -3' miRNA: 3'- -GGCCGUUGCGu------UGCC-GGUCGU--AGUUc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 13174 | 0.67 | 0.647206 |
Target: 5'- gCCGGCAAccCGgAACGGCuCAagauugcgcGCGUgGAGg -3' miRNA: 3'- -GGCCGUU--GCgUUGCCG-GU---------CGUAgUUC- -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 1351 | 0.67 | 0.647206 |
Target: 5'- gCGGCG--GUGugGGCgGGCAUCAc- -3' miRNA: 3'- gGCCGUugCGUugCCGgUCGUAGUuc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 9442 | 0.67 | 0.647206 |
Target: 5'- gUGGCugcacAAUGCAcGCGGCC-GCAUCAu- -3' miRNA: 3'- gGCCG-----UUGCGU-UGCCGGuCGUAGUuc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 9874 | 0.67 | 0.635918 |
Target: 5'- aCCGGC-GCGCugcuucuCGGCCAGgCgcguggcgauGUCGAGc -3' miRNA: 3'- -GGCCGuUGCGuu-----GCCGGUC-G----------UAGUUC- -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 4886 | 0.67 | 0.635918 |
Target: 5'- aCGGCGACcuguCGcCGGCCAGCAa---- -3' miRNA: 3'- gGCCGUUGc---GUuGCCGGUCGUaguuc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 17682 | 0.67 | 0.635918 |
Target: 5'- gCGGCAAa-CAucgaGGCCGGUAUCGAc -3' miRNA: 3'- gGCCGUUgcGUug--CCGGUCGUAGUUc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 28890 | 0.67 | 0.635918 |
Target: 5'- uCCGGCcgcaacccGACGaCGGCGcGCUGGCugcUCAAGa -3' miRNA: 3'- -GGCCG--------UUGC-GUUGC-CGGUCGu--AGUUC- -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 23106 | 0.67 | 0.624627 |
Target: 5'- -aGGCAcaACGCAGCGcGC-AGCAaCAAGc -3' miRNA: 3'- ggCCGU--UGCGUUGC-CGgUCGUaGUUC- -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 23106 | 0.67 | 0.624627 |
Target: 5'- aCGGCGGCGCccACGGCgaCAGCggUAAc -3' miRNA: 3'- gGCCGUUGCGu-UGCCG--GUCGuaGUUc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 9854 | 0.67 | 0.624627 |
Target: 5'- uUCGGCGuGCGCGACcuGGCC-GCGUgGAa -3' miRNA: 3'- -GGCCGU-UGCGUUG--CCGGuCGUAgUUc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 28590 | 0.67 | 0.624627 |
Target: 5'- aCCGGCAGCGUGguguCGGUCAGUu----- -3' miRNA: 3'- -GGCCGUUGCGUu---GCCGGUCGuaguuc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 23666 | 0.67 | 0.624627 |
Target: 5'- aCCGGgGgcugcACGCAugACGGCCAuCGUCGc- -3' miRNA: 3'- -GGCCgU-----UGCGU--UGCCGGUcGUAGUuc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 12122 | 0.67 | 0.613342 |
Target: 5'- aUCGGCAgguugGCGCGACGcGCCAcGCGc---- -3' miRNA: 3'- -GGCCGU-----UGCGUUGC-CGGU-CGUaguuc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 3945 | 0.67 | 0.613342 |
Target: 5'- gCGGCGACgGCAgcGCGGCCuacAGCGaCGGc -3' miRNA: 3'- gGCCGUUG-CGU--UGCCGG---UCGUaGUUc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 8783 | 0.67 | 0.613342 |
Target: 5'- cCCGGCucaagguGCGCGAcauccgaccCGGCCAGUA-CAc- -3' miRNA: 3'- -GGCCGu------UGCGUU---------GCCGGUCGUaGUuc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 35212 | 0.67 | 0.613342 |
Target: 5'- uUCGGCcuucGCGCgAAUGGCCuuGCAcCAGGa -3' miRNA: 3'- -GGCCGu---UGCG-UUGCCGGu-CGUaGUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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