miRNA display CGI


Results 41 - 60 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26641 5' -54.3 NC_005808.1 + 9874 0.67 0.635918
Target:  5'- aCCGGC-GCGCugcuucuCGGCCAGgCgcguggcgauGUCGAGc -3'
miRNA:   3'- -GGCCGuUGCGuu-----GCCGGUC-G----------UAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 10595 0.71 0.392705
Target:  5'- gUGGCGGCGgaaagcguggcCGGCGGUCAGCAguucgaUCAAGa -3'
miRNA:   3'- gGCCGUUGC-----------GUUGCCGGUCGU------AGUUC- -5'
26641 5' -54.3 NC_005808.1 + 10696 0.71 0.392705
Target:  5'- aCGGCAGCGCGcACGGCCucGGCc----- -3'
miRNA:   3'- gGCCGUUGCGU-UGCCGG--UCGuaguuc -5'
26641 5' -54.3 NC_005808.1 + 10875 0.66 0.714228
Target:  5'- uUCGGuCGGCGCGAUGcGCgCGGCGUa--- -3'
miRNA:   3'- -GGCC-GUUGCGUUGC-CG-GUCGUAguuc -5'
26641 5' -54.3 NC_005808.1 + 11236 0.69 0.532083
Target:  5'- aCGGCcgaccAGCGCAcgcaacgugcgcagGCGGCCcAGCAgCAGGc -3'
miRNA:   3'- gGCCG-----UUGCGU--------------UGCCGG-UCGUaGUUC- -5'
26641 5' -54.3 NC_005808.1 + 11379 0.66 0.714228
Target:  5'- cCCGGCAccucggugGCGaccugAugGGCCAGgGUCu-- -3'
miRNA:   3'- -GGCCGU--------UGCg----UugCCGGUCgUAGuuc -5'
26641 5' -54.3 NC_005808.1 + 11631 0.69 0.481821
Target:  5'- gCGGCAugGCuucgaugaccGGCGGgCAGUccuAUCAGGa -3'
miRNA:   3'- gGCCGUugCG----------UUGCCgGUCG---UAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 11669 0.67 0.647206
Target:  5'- gCUGGCAcugcuGCcCGGCGGCCAGCcggCGGc -3'
miRNA:   3'- -GGCCGU-----UGcGUUGCCGGUCGua-GUUc -5'
26641 5' -54.3 NC_005808.1 + 11837 0.68 0.590834
Target:  5'- aCCGGCcGCGCcGCGGUUGGCcugggCGAa -3'
miRNA:   3'- -GGCCGuUGCGuUGCCGGUCGua---GUUc -5'
26641 5' -54.3 NC_005808.1 + 12014 0.71 0.392705
Target:  5'- gCCaGCAGCGCGGCcguGGCCGGCGa---- -3'
miRNA:   3'- -GGcCGUUGCGUUG---CCGGUCGUaguuc -5'
26641 5' -54.3 NC_005808.1 + 12122 0.67 0.613342
Target:  5'- aUCGGCAgguugGCGCGACGcGCCAcGCGc---- -3'
miRNA:   3'- -GGCCGU-----UGCGUUGC-CGGU-CGUaguuc -5'
26641 5' -54.3 NC_005808.1 + 12257 0.68 0.579631
Target:  5'- -aGGCAGCGCG--GGCCGGUuUCGu- -3'
miRNA:   3'- ggCCGUUGCGUugCCGGUCGuAGUuc -5'
26641 5' -54.3 NC_005808.1 + 12348 0.7 0.450967
Target:  5'- gCCGGC-ACGCug-GGCCAGCAacccgccCAGGa -3'
miRNA:   3'- -GGCCGuUGCGuugCCGGUCGUa------GUUC- -5'
26641 5' -54.3 NC_005808.1 + 12497 0.66 0.714228
Target:  5'- gUCGGCGacaucgacaGCGCcACcaaGGaCGGCAUCAAGg -3'
miRNA:   3'- -GGCCGU---------UGCGuUG---CCgGUCGUAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 12629 0.76 0.212385
Target:  5'- gCCGcGCAGCGCGA-GGCCGGCAagAAa -3'
miRNA:   3'- -GGC-CGUUGCGUUgCCGGUCGUagUUc -5'
26641 5' -54.3 NC_005808.1 + 12630 0.66 0.668604
Target:  5'- cUCGGCAuCGCuGCuGCCguccuuuGGCGUCGGGu -3'
miRNA:   3'- -GGCCGUuGCGuUGcCGG-------UCGUAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 13016 0.7 0.431012
Target:  5'- gCCGcGCAGCGCAguggcgACGGCCu-CGUCAu- -3'
miRNA:   3'- -GGC-CGUUGCGU------UGCCGGucGUAGUuc -5'
26641 5' -54.3 NC_005808.1 + 13174 0.67 0.647206
Target:  5'- gCCGGCAAccCGgAACGGCuCAagauugcgcGCGUgGAGg -3'
miRNA:   3'- -GGCCGUU--GCgUUGCCG-GU---------CGUAgUUC- -5'
26641 5' -54.3 NC_005808.1 + 13176 0.67 0.602075
Target:  5'- gUCGGCcGCGCugggcgcccuUGGCCGGCGUUg-- -3'
miRNA:   3'- -GGCCGuUGCGuu--------GCCGGUCGUAGuuc -5'
26641 5' -54.3 NC_005808.1 + 13246 0.7 0.449958
Target:  5'- gCCGGCcaagggcgcccAGCGCGGCcgacacuGGCCGaCAUCGAGg -3'
miRNA:   3'- -GGCCG-----------UUGCGUUG-------CCGGUcGUAGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.