miRNA display CGI


Results 41 - 60 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26641 5' -54.3 NC_005808.1 + 31433 0.67 0.613342
Target:  5'- aCGGCGACGCcacgaucuGCGGCgUGGuCAUCGGa -3'
miRNA:   3'- gGCCGUUGCGu-------UGCCG-GUC-GUAGUUc -5'
26641 5' -54.3 NC_005808.1 + 31307 0.67 0.65848
Target:  5'- cCCGGCu-CGUAGCugGGCCGcGCGcCGGGg -3'
miRNA:   3'- -GGCCGuuGCGUUG--CCGGU-CGUaGUUC- -5'
26641 5' -54.3 NC_005808.1 + 31093 0.66 0.7032
Target:  5'- cCCGcGCGAuUGCcuCGGCCGGCAa---- -3'
miRNA:   3'- -GGC-CGUU-GCGuuGCCGGUCGUaguuc -5'
26641 5' -54.3 NC_005808.1 + 30421 0.66 0.7032
Target:  5'- cUCGGCAugGCGAUGaGCgCGGg--CAGGg -3'
miRNA:   3'- -GGCCGUugCGUUGC-CG-GUCguaGUUC- -5'
26641 5' -54.3 NC_005808.1 + 30299 0.66 0.718616
Target:  5'- uCgGGUAGCGCcccuGCGaGCCGcuuugcguguacuucGCGUCGGGg -3'
miRNA:   3'- -GgCCGUUGCGu---UGC-CGGU---------------CGUAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 30191 0.69 0.491276
Target:  5'- gCCGGCGGCGUGuucuggcGCGGCCu-CAUCGc- -3'
miRNA:   3'- -GGCCGUUGCGU-------UGCCGGucGUAGUuc -5'
26641 5' -54.3 NC_005808.1 + 29460 0.69 0.524467
Target:  5'- cCUGGCAccaggcgacgaaGCGC-GCGGCCAguuccGCGUCGGu -3'
miRNA:   3'- -GGCCGU------------UGCGuUGCCGGU-----CGUAGUUc -5'
26641 5' -54.3 NC_005808.1 + 29021 0.69 0.492332
Target:  5'- aCCaGGCGccGCGCuuCGGCCAG-GUCGAu -3'
miRNA:   3'- -GG-CCGU--UGCGuuGCCGGUCgUAGUUc -5'
26641 5' -54.3 NC_005808.1 + 28957 0.72 0.348046
Target:  5'- gUCGGCGACggccaGCAACuacGCCAGCAgCGAGg -3'
miRNA:   3'- -GGCCGUUG-----CGUUGc--CGGUCGUaGUUC- -5'
26641 5' -54.3 NC_005808.1 + 28890 0.67 0.635918
Target:  5'- uCCGGCcgcaacccGACGaCGGCGcGCUGGCugcUCAAGa -3'
miRNA:   3'- -GGCCG--------UUGC-GUUGC-CGGUCGu--AGUUC- -5'
26641 5' -54.3 NC_005808.1 + 28705 0.71 0.411583
Target:  5'- uCUGGCAcuGCGCGGgaacUGGCCGGCcUCAu- -3'
miRNA:   3'- -GGCCGU--UGCGUU----GCCGGUCGuAGUuc -5'
26641 5' -54.3 NC_005808.1 + 28670 0.7 0.440925
Target:  5'- gCCGGCGgccucgccaGCGCGGCGcGCCA-CGUCGu- -3'
miRNA:   3'- -GGCCGU---------UGCGUUGC-CGGUcGUAGUuc -5'
26641 5' -54.3 NC_005808.1 + 28637 0.76 0.195131
Target:  5'- gCCGGUGGCcgacgugcgcgccGCGAUGGCCGGCGgccgCAAGg -3'
miRNA:   3'- -GGCCGUUG-------------CGUUGCCGGUCGUa---GUUC- -5'
26641 5' -54.3 NC_005808.1 + 28590 0.67 0.624627
Target:  5'- aCCGGCAGCGUGguguCGGUCAGUu----- -3'
miRNA:   3'- -GGCCGUUGCGUu---GCCGGUCGuaguuc -5'
26641 5' -54.3 NC_005808.1 + 28464 0.71 0.402073
Target:  5'- aCUGGCGcCGC-GCcGCCGGCGUCGAa -3'
miRNA:   3'- -GGCCGUuGCGuUGcCGGUCGUAGUUc -5'
26641 5' -54.3 NC_005808.1 + 28403 0.76 0.212385
Target:  5'- gCCGGCGGCGCGGCG-CCAGUAg---- -3'
miRNA:   3'- -GGCCGUUGCGUUGCcGGUCGUaguuc -5'
26641 5' -54.3 NC_005808.1 + 27895 0.66 0.669727
Target:  5'- gCGGcCGGCGCcaccGCGGgCAGCGcgcgCGAGg -3'
miRNA:   3'- gGCC-GUUGCGu---UGCCgGUCGUa---GUUC- -5'
26641 5' -54.3 NC_005808.1 + 27809 0.69 0.534266
Target:  5'- -gGGCAgcgaguuGCGCGAgGGCCu-CAUCAAGu -3'
miRNA:   3'- ggCCGU-------UGCGUUgCCGGucGUAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 27772 0.7 0.468321
Target:  5'- aCCGGCGgcgagccgcugccgGCGC-GCGGCCuGUAUucCAAGa -3'
miRNA:   3'- -GGCCGU--------------UGCGuUGCCGGuCGUA--GUUC- -5'
26641 5' -54.3 NC_005808.1 + 27501 0.68 0.546329
Target:  5'- gCCGGCGGCcuCGGCcGCCAGCuucucggcgcgGUCGGGg -3'
miRNA:   3'- -GGCCGUUGc-GUUGcCGGUCG-----------UAGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.