Results 61 - 80 of 181 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26641 | 5' | -54.3 | NC_005808.1 | + | 26854 | 0.67 | 0.647206 |
Target: 5'- gCgGGCGAauuggGUAAUGGUCGGCGgaagCAAGg -3' miRNA: 3'- -GgCCGUUg----CGUUGCCGGUCGUa---GUUC- -5' |
|||||||
26641 | 5' | -54.3 | NC_005808.1 | + | 26405 | 0.69 | 0.535359 |
Target: 5'- aCGaGCGGCGCGgccaguucGCGGUgcGCGUCAAGa -3' miRNA: 3'- gGC-CGUUGCGU--------UGCCGguCGUAGUUC- -5' |
|||||||
26641 | 5' | -54.3 | NC_005808.1 | + | 26140 | 0.69 | 0.492332 |
Target: 5'- gCGGCAgauuugGCGCAGCGGCUcGcCGUCu-- -3' miRNA: 3'- gGCCGU------UGCGUUGCCGGuC-GUAGuuc -5' |
|||||||
26641 | 5' | -54.3 | NC_005808.1 | + | 25619 | 0.73 | 0.315012 |
Target: 5'- aCGGCGGCGCggUcGCCAGCAgcgCGu- -3' miRNA: 3'- gGCCGUUGCGuuGcCGGUCGUa--GUuc -5' |
|||||||
26641 | 5' | -54.3 | NC_005808.1 | + | 25542 | 0.71 | 0.392705 |
Target: 5'- gCCGGCAGCGCccccguagccGAUGauGUCGGCGUCGGa -3' miRNA: 3'- -GGCCGUUGCG----------UUGC--CGGUCGUAGUUc -5' |
|||||||
26641 | 5' | -54.3 | NC_005808.1 | + | 25414 | 0.68 | 0.579631 |
Target: 5'- gCCGGCuAUGCGAacUGGCCGGCcUgGAc -3' miRNA: 3'- -GGCCGuUGCGUU--GCCGGUCGuAgUUc -5' |
|||||||
26641 | 5' | -54.3 | NC_005808.1 | + | 25382 | 0.71 | 0.38348 |
Target: 5'- cCCGGCGACG-AGC-GCCGGUggCAGGg -3' miRNA: 3'- -GGCCGUUGCgUUGcCGGUCGuaGUUC- -5' |
|||||||
26641 | 5' | -54.3 | NC_005808.1 | + | 24859 | 0.71 | 0.38348 |
Target: 5'- aCGGCGACuuCAAC-GCgGGCAUCGAGg -3' miRNA: 3'- gGCCGUUGc-GUUGcCGgUCGUAGUUC- -5' |
|||||||
26641 | 5' | -54.3 | NC_005808.1 | + | 24825 | 0.72 | 0.356681 |
Target: 5'- uCUGGCuGCGCAAUGGCUcgGGCAacgauugCAGGg -3' miRNA: 3'- -GGCCGuUGCGUUGCCGG--UCGUa------GUUC- -5' |
|||||||
26641 | 5' | -54.3 | NC_005808.1 | + | 24553 | 0.72 | 0.365467 |
Target: 5'- gUCGcGCAGCGCGGCgauggcgaGGCCGGCcacgGUCGGGc -3' miRNA: 3'- -GGC-CGUUGCGUUG--------CCGGUCG----UAGUUC- -5' |
|||||||
26641 | 5' | -54.3 | NC_005808.1 | + | 24141 | 0.68 | 0.590834 |
Target: 5'- gCCGGCuGCGCGccUGGCcCAGCGccUCGAc -3' miRNA: 3'- -GGCCGuUGCGUu-GCCG-GUCGU--AGUUc -5' |
|||||||
26641 | 5' | -54.3 | NC_005808.1 | + | 23926 | 0.68 | 0.568473 |
Target: 5'- gCCGGCAuagGCGUGAUGGUCAGgCGccgcccggCGAGg -3' miRNA: 3'- -GGCCGU---UGCGUUGCCGGUC-GUa-------GUUC- -5' |
|||||||
26641 | 5' | -54.3 | NC_005808.1 | + | 23707 | 0.67 | 0.647206 |
Target: 5'- gCCGGUAGCGCccaggucGCGGgCCAGUGccUCGGu -3' miRNA: 3'- -GGCCGUUGCGu------UGCC-GGUCGU--AGUUc -5' |
|||||||
26641 | 5' | -54.3 | NC_005808.1 | + | 23666 | 0.67 | 0.624627 |
Target: 5'- aCCGGgGgcugcACGCAugACGGCCAuCGUCGc- -3' miRNA: 3'- -GGCCgU-----UGCGU--UGCCGGUcGUAGUuc -5' |
|||||||
26641 | 5' | -54.3 | NC_005808.1 | + | 23644 | 0.69 | 0.492332 |
Target: 5'- gCGGUAGC-CGGCGGCgGGCAgCAAc -3' miRNA: 3'- gGCCGUUGcGUUGCCGgUCGUaGUUc -5' |
|||||||
26641 | 5' | -54.3 | NC_005808.1 | + | 23618 | 0.69 | 0.481821 |
Target: 5'- gCCGGCGAUGU--CGGCCgaGGcCAUCGAc -3' miRNA: 3'- -GGCCGUUGCGuuGCCGG--UC-GUAGUUc -5' |
|||||||
26641 | 5' | -54.3 | NC_005808.1 | + | 23532 | 0.66 | 0.692099 |
Target: 5'- uCCaGGCGGCGCAcGCGGUCgauGGCcUCGGc -3' miRNA: 3'- -GG-CCGUUGCGU-UGCCGG---UCGuAGUUc -5' |
|||||||
26641 | 5' | -54.3 | NC_005808.1 | + | 23518 | 0.78 | 0.156175 |
Target: 5'- gCCGGCGuguacGCGCGAaccauccgcauccCGGCCGGCGUCGc- -3' miRNA: 3'- -GGCCGU-----UGCGUU-------------GCCGGUCGUAGUuc -5' |
|||||||
26641 | 5' | -54.3 | NC_005808.1 | + | 23282 | 0.66 | 0.67085 |
Target: 5'- gUCGGCGuGCGCcacgaaugccuguuuGCGGCCGGCAcuggcCGGGa -3' miRNA: 3'- -GGCCGU-UGCGu--------------UGCCGGUCGUa----GUUC- -5' |
|||||||
26641 | 5' | -54.3 | NC_005808.1 | + | 23106 | 0.67 | 0.624627 |
Target: 5'- -aGGCAcaACGCAGCGcGC-AGCAaCAAGc -3' miRNA: 3'- ggCCGU--UGCGUUGC-CGgUCGUaGUUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home