miRNA display CGI


Results 61 - 80 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26641 5' -54.3 NC_005808.1 + 26854 0.67 0.647206
Target:  5'- gCgGGCGAauuggGUAAUGGUCGGCGgaagCAAGg -3'
miRNA:   3'- -GgCCGUUg----CGUUGCCGGUCGUa---GUUC- -5'
26641 5' -54.3 NC_005808.1 + 26405 0.69 0.535359
Target:  5'- aCGaGCGGCGCGgccaguucGCGGUgcGCGUCAAGa -3'
miRNA:   3'- gGC-CGUUGCGU--------UGCCGguCGUAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 26140 0.69 0.492332
Target:  5'- gCGGCAgauuugGCGCAGCGGCUcGcCGUCu-- -3'
miRNA:   3'- gGCCGU------UGCGUUGCCGGuC-GUAGuuc -5'
26641 5' -54.3 NC_005808.1 + 25619 0.73 0.315012
Target:  5'- aCGGCGGCGCggUcGCCAGCAgcgCGu- -3'
miRNA:   3'- gGCCGUUGCGuuGcCGGUCGUa--GUuc -5'
26641 5' -54.3 NC_005808.1 + 25542 0.71 0.392705
Target:  5'- gCCGGCAGCGCccccguagccGAUGauGUCGGCGUCGGa -3'
miRNA:   3'- -GGCCGUUGCG----------UUGC--CGGUCGUAGUUc -5'
26641 5' -54.3 NC_005808.1 + 25414 0.68 0.579631
Target:  5'- gCCGGCuAUGCGAacUGGCCGGCcUgGAc -3'
miRNA:   3'- -GGCCGuUGCGUU--GCCGGUCGuAgUUc -5'
26641 5' -54.3 NC_005808.1 + 25382 0.71 0.38348
Target:  5'- cCCGGCGACG-AGC-GCCGGUggCAGGg -3'
miRNA:   3'- -GGCCGUUGCgUUGcCGGUCGuaGUUC- -5'
26641 5' -54.3 NC_005808.1 + 24859 0.71 0.38348
Target:  5'- aCGGCGACuuCAAC-GCgGGCAUCGAGg -3'
miRNA:   3'- gGCCGUUGc-GUUGcCGgUCGUAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 24825 0.72 0.356681
Target:  5'- uCUGGCuGCGCAAUGGCUcgGGCAacgauugCAGGg -3'
miRNA:   3'- -GGCCGuUGCGUUGCCGG--UCGUa------GUUC- -5'
26641 5' -54.3 NC_005808.1 + 24553 0.72 0.365467
Target:  5'- gUCGcGCAGCGCGGCgauggcgaGGCCGGCcacgGUCGGGc -3'
miRNA:   3'- -GGC-CGUUGCGUUG--------CCGGUCG----UAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 24141 0.68 0.590834
Target:  5'- gCCGGCuGCGCGccUGGCcCAGCGccUCGAc -3'
miRNA:   3'- -GGCCGuUGCGUu-GCCG-GUCGU--AGUUc -5'
26641 5' -54.3 NC_005808.1 + 23926 0.68 0.568473
Target:  5'- gCCGGCAuagGCGUGAUGGUCAGgCGccgcccggCGAGg -3'
miRNA:   3'- -GGCCGU---UGCGUUGCCGGUC-GUa-------GUUC- -5'
26641 5' -54.3 NC_005808.1 + 23707 0.67 0.647206
Target:  5'- gCCGGUAGCGCccaggucGCGGgCCAGUGccUCGGu -3'
miRNA:   3'- -GGCCGUUGCGu------UGCC-GGUCGU--AGUUc -5'
26641 5' -54.3 NC_005808.1 + 23666 0.67 0.624627
Target:  5'- aCCGGgGgcugcACGCAugACGGCCAuCGUCGc- -3'
miRNA:   3'- -GGCCgU-----UGCGU--UGCCGGUcGUAGUuc -5'
26641 5' -54.3 NC_005808.1 + 23644 0.69 0.492332
Target:  5'- gCGGUAGC-CGGCGGCgGGCAgCAAc -3'
miRNA:   3'- gGCCGUUGcGUUGCCGgUCGUaGUUc -5'
26641 5' -54.3 NC_005808.1 + 23618 0.69 0.481821
Target:  5'- gCCGGCGAUGU--CGGCCgaGGcCAUCGAc -3'
miRNA:   3'- -GGCCGUUGCGuuGCCGG--UC-GUAGUUc -5'
26641 5' -54.3 NC_005808.1 + 23532 0.66 0.692099
Target:  5'- uCCaGGCGGCGCAcGCGGUCgauGGCcUCGGc -3'
miRNA:   3'- -GG-CCGUUGCGU-UGCCGG---UCGuAGUUc -5'
26641 5' -54.3 NC_005808.1 + 23518 0.78 0.156175
Target:  5'- gCCGGCGuguacGCGCGAaccauccgcauccCGGCCGGCGUCGc- -3'
miRNA:   3'- -GGCCGU-----UGCGUU-------------GCCGGUCGUAGUuc -5'
26641 5' -54.3 NC_005808.1 + 23282 0.66 0.67085
Target:  5'- gUCGGCGuGCGCcacgaaugccuguuuGCGGCCGGCAcuggcCGGGa -3'
miRNA:   3'- -GGCCGU-UGCGu--------------UGCCGGUCGUa----GUUC- -5'
26641 5' -54.3 NC_005808.1 + 23106 0.67 0.624627
Target:  5'- -aGGCAcaACGCAGCGcGC-AGCAaCAAGc -3'
miRNA:   3'- ggCCGU--UGCGUUGC-CGgUCGUaGUUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.