miRNA display CGI


Results 61 - 80 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26641 5' -54.3 NC_005808.1 + 41812 0.71 0.402073
Target:  5'- aCGGCGauuGCGCAGCGGCCcgaucugaccGGCAa---- -3'
miRNA:   3'- gGCCGU---UGCGUUGCCGG----------UCGUaguuc -5'
26641 5' -54.3 NC_005808.1 + 8912 0.69 0.492332
Target:  5'- aUCGGCGGCGCGcucgAUGGCUucgGGCGUgGAc -3'
miRNA:   3'- -GGCCGUUGCGU----UGCCGG---UCGUAgUUc -5'
26641 5' -54.3 NC_005808.1 + 26140 0.69 0.492332
Target:  5'- gCGGCAgauuugGCGCAGCGGCUcGcCGUCu-- -3'
miRNA:   3'- gGCCGU------UGCGUUGCCGGuC-GUAGuuc -5'
26641 5' -54.3 NC_005808.1 + 4688 0.69 0.492332
Target:  5'- gCCGGaUAGCGCGGCgagaauGGCCGGCAa---- -3'
miRNA:   3'- -GGCC-GUUGCGUUG------CCGGUCGUaguuc -5'
26641 5' -54.3 NC_005808.1 + 23644 0.69 0.492332
Target:  5'- gCGGUAGC-CGGCGGCgGGCAgCAAc -3'
miRNA:   3'- gGCCGUUGcGUUGCCGgUCGUaGUUc -5'
26641 5' -54.3 NC_005808.1 + 34551 0.69 0.481821
Target:  5'- aUGGUcgaGCAGCGGUUgAGCGUCGAGg -3'
miRNA:   3'- gGCCGuugCGUUGCCGG-UCGUAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 4925 0.69 0.480776
Target:  5'- gUCGGCAGCgaugcccGCGACGGUCuGCAcgucugCGAGg -3'
miRNA:   3'- -GGCCGUUG-------CGUUGCCGGuCGUa-----GUUC- -5'
26641 5' -54.3 NC_005808.1 + 36053 0.7 0.47142
Target:  5'- gCgGGCugcuACGuCAAC-GCCAGCAUCGAa -3'
miRNA:   3'- -GgCCGu---UGC-GUUGcCGGUCGUAGUUc -5'
26641 5' -54.3 NC_005808.1 + 8115 0.7 0.461134
Target:  5'- cCCuGCAcCGC-GCGGCCGGCGUUg-- -3'
miRNA:   3'- -GGcCGUuGCGuUGCCGGUCGUAGuuc -5'
26641 5' -54.3 NC_005808.1 + 5934 0.7 0.450967
Target:  5'- cCUGGUugucauucAGCGCAACGGuguaguccguacCCAGgGUCAAGg -3'
miRNA:   3'- -GGCCG--------UUGCGUUGCC------------GGUCgUAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 28670 0.7 0.440925
Target:  5'- gCCGGCGgccucgccaGCGCGGCGcGCCA-CGUCGu- -3'
miRNA:   3'- -GGCCGU---------UGCGUUGC-CGGUcGUAGUuc -5'
26641 5' -54.3 NC_005808.1 + 803 0.7 0.440925
Target:  5'- uCCGGCGACGCGccGCGcCCAGCccuugccgaacGUCGGc -3'
miRNA:   3'- -GGCCGUUGCGU--UGCcGGUCG-----------UAGUUc -5'
26641 5' -54.3 NC_005808.1 + 38033 0.7 0.440925
Target:  5'- aCCGaGCAGCGCcuCGGCgacuuCGGCcUCAAGc -3'
miRNA:   3'- -GGC-CGUUGCGuuGCCG-----GUCGuAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 4802 0.7 0.431012
Target:  5'- gCCGGCuGGCGCugcgggauuGCuGGCCGGCGaCAGGu -3'
miRNA:   3'- -GGCCG-UUGCGu--------UG-CCGGUCGUaGUUC- -5'
26641 5' -54.3 NC_005808.1 + 13016 0.7 0.431012
Target:  5'- gCCGcGCAGCGCAguggcgACGGCCu-CGUCAu- -3'
miRNA:   3'- -GGC-CGUUGCGU------UGCCGGucGUAGUuc -5'
26641 5' -54.3 NC_005808.1 + 32846 0.71 0.421229
Target:  5'- aCGGCuuCGCcuggccgcaGACGGUCGGCGcCGAGa -3'
miRNA:   3'- gGCCGuuGCG---------UUGCCGGUCGUaGUUC- -5'
26641 5' -54.3 NC_005808.1 + 13293 0.71 0.421229
Target:  5'- gCCGauuGCAGCGCGccGgGGCCGGCGUUg-- -3'
miRNA:   3'- -GGC---CGUUGCGU--UgCCGGUCGUAGuuc -5'
26641 5' -54.3 NC_005808.1 + 37961 0.71 0.411583
Target:  5'- aUGGcCGACGCAGCguGGcCCAGCAUCc-- -3'
miRNA:   3'- gGCC-GUUGCGUUG--CC-GGUCGUAGuuc -5'
26641 5' -54.3 NC_005808.1 + 7684 0.71 0.411583
Target:  5'- uUGGCGGCGaucuGCGGCCGGUAgcccUCGAa -3'
miRNA:   3'- gGCCGUUGCgu--UGCCGGUCGU----AGUUc -5'
26641 5' -54.3 NC_005808.1 + 37641 0.71 0.392705
Target:  5'- aCCaGCAGCGCGauacGCGGCU-GCAUCGu- -3'
miRNA:   3'- -GGcCGUUGCGU----UGCCGGuCGUAGUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.