Results 61 - 80 of 181 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26641 | 5' | -54.3 | NC_005808.1 | + | 13246 | 0.7 | 0.449958 |
Target: 5'- gCCGGCcaagggcgcccAGCGCGGCcgacacuGGCCGaCAUCGAGg -3' miRNA: 3'- -GGCCG-----------UUGCGUUG-------CCGGUcGUAGUUC- -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 12348 | 0.7 | 0.450967 |
Target: 5'- gCCGGC-ACGCug-GGCCAGCAacccgccCAGGa -3' miRNA: 3'- -GGCCGuUGCGuugCCGGUCGUa------GUUC- -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 5934 | 0.7 | 0.450967 |
Target: 5'- cCUGGUugucauucAGCGCAACGGuguaguccguacCCAGgGUCAAGg -3' miRNA: 3'- -GGCCG--------UUGCGUUGCC------------GGUCgUAGUUC- -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 8115 | 0.7 | 0.461134 |
Target: 5'- cCCuGCAcCGC-GCGGCCGGCGUUg-- -3' miRNA: 3'- -GGcCGUuGCGuUGCCGGUCGUAGuuc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 27772 | 0.7 | 0.468321 |
Target: 5'- aCCGGCGgcgagccgcugccgGCGC-GCGGCCuGUAUucCAAGa -3' miRNA: 3'- -GGCCGU--------------UGCGuUGCCGGuCGUA--GUUC- -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 4687 | 0.7 | 0.468321 |
Target: 5'- gCGGCAGCGCGGgccaacauUGGCCuggcugaccugggcGGCAUCGc- -3' miRNA: 3'- gGCCGUUGCGUU--------GCCGG--------------UCGUAGUuc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 36053 | 0.7 | 0.47142 |
Target: 5'- gCgGGCugcuACGuCAAC-GCCAGCAUCGAa -3' miRNA: 3'- -GgCCGu---UGC-GUUGcCGGUCGUAGUUc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 4925 | 0.69 | 0.480776 |
Target: 5'- gUCGGCAGCgaugcccGCGACGGUCuGCAcgucugCGAGg -3' miRNA: 3'- -GGCCGUUG-------CGUUGCCGGuCGUa-----GUUC- -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 11631 | 0.69 | 0.481821 |
Target: 5'- gCGGCAugGCuucgaugaccGGCGGgCAGUccuAUCAGGa -3' miRNA: 3'- gGCCGUugCG----------UUGCCgGUCG---UAGUUC- -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 34551 | 0.69 | 0.481821 |
Target: 5'- aUGGUcgaGCAGCGGUUgAGCGUCGAGg -3' miRNA: 3'- gGCCGuugCGUUGCCGG-UCGUAGUUC- -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 23618 | 0.69 | 0.481821 |
Target: 5'- gCCGGCGAUGU--CGGCCgaGGcCAUCGAc -3' miRNA: 3'- -GGCCGUUGCGuuGCCGG--UC-GUAGUUc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 30191 | 0.69 | 0.491276 |
Target: 5'- gCCGGCGGCGUGuucuggcGCGGCCu-CAUCGc- -3' miRNA: 3'- -GGCCGUUGCGU-------UGCCGGucGUAGUuc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 4688 | 0.69 | 0.492332 |
Target: 5'- gCCGGaUAGCGCGGCgagaauGGCCGGCAa---- -3' miRNA: 3'- -GGCC-GUUGCGUUG------CCGGUCGUaguuc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 23644 | 0.69 | 0.492332 |
Target: 5'- gCGGUAGC-CGGCGGCgGGCAgCAAc -3' miRNA: 3'- gGCCGUUGcGUUGCCGgUCGUaGUUc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 26140 | 0.69 | 0.492332 |
Target: 5'- gCGGCAgauuugGCGCAGCGGCUcGcCGUCu-- -3' miRNA: 3'- gGCCGU------UGCGUUGCCGGuC-GUAGuuc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 32589 | 0.69 | 0.492332 |
Target: 5'- aCCGcCGACGCugugaccaAGCuGGCCcGCGUCAAGg -3' miRNA: 3'- -GGCcGUUGCG--------UUG-CCGGuCGUAGUUC- -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 8912 | 0.69 | 0.492332 |
Target: 5'- aUCGGCGGCGCGcucgAUGGCUucgGGCGUgGAc -3' miRNA: 3'- -GGCCGUUGCGU----UGCCGG---UCGUAgUUc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 29021 | 0.69 | 0.492332 |
Target: 5'- aCCaGGCGccGCGCuuCGGCCAG-GUCGAu -3' miRNA: 3'- -GG-CCGU--UGCGuuGCCGGUCgUAGUUc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 22390 | 0.69 | 0.492332 |
Target: 5'- cUCGGC-GCGUucggcACGGCCAGCAgCAu- -3' miRNA: 3'- -GGCCGuUGCGu----UGCCGGUCGUaGUuc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 21814 | 0.69 | 0.502947 |
Target: 5'- aCCGGCAguuGCAGCGGCgGGUugcucuuguaGUCGAu -3' miRNA: 3'- -GGCCGUug-CGUUGCCGgUCG----------UAGUUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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