miRNA display CGI


Results 61 - 80 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26641 5' -54.3 NC_005808.1 + 13246 0.7 0.449958
Target:  5'- gCCGGCcaagggcgcccAGCGCGGCcgacacuGGCCGaCAUCGAGg -3'
miRNA:   3'- -GGCCG-----------UUGCGUUG-------CCGGUcGUAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 12348 0.7 0.450967
Target:  5'- gCCGGC-ACGCug-GGCCAGCAacccgccCAGGa -3'
miRNA:   3'- -GGCCGuUGCGuugCCGGUCGUa------GUUC- -5'
26641 5' -54.3 NC_005808.1 + 5934 0.7 0.450967
Target:  5'- cCUGGUugucauucAGCGCAACGGuguaguccguacCCAGgGUCAAGg -3'
miRNA:   3'- -GGCCG--------UUGCGUUGCC------------GGUCgUAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 8115 0.7 0.461134
Target:  5'- cCCuGCAcCGC-GCGGCCGGCGUUg-- -3'
miRNA:   3'- -GGcCGUuGCGuUGCCGGUCGUAGuuc -5'
26641 5' -54.3 NC_005808.1 + 27772 0.7 0.468321
Target:  5'- aCCGGCGgcgagccgcugccgGCGC-GCGGCCuGUAUucCAAGa -3'
miRNA:   3'- -GGCCGU--------------UGCGuUGCCGGuCGUA--GUUC- -5'
26641 5' -54.3 NC_005808.1 + 4687 0.7 0.468321
Target:  5'- gCGGCAGCGCGGgccaacauUGGCCuggcugaccugggcGGCAUCGc- -3'
miRNA:   3'- gGCCGUUGCGUU--------GCCGG--------------UCGUAGUuc -5'
26641 5' -54.3 NC_005808.1 + 36053 0.7 0.47142
Target:  5'- gCgGGCugcuACGuCAAC-GCCAGCAUCGAa -3'
miRNA:   3'- -GgCCGu---UGC-GUUGcCGGUCGUAGUUc -5'
26641 5' -54.3 NC_005808.1 + 4925 0.69 0.480776
Target:  5'- gUCGGCAGCgaugcccGCGACGGUCuGCAcgucugCGAGg -3'
miRNA:   3'- -GGCCGUUG-------CGUUGCCGGuCGUa-----GUUC- -5'
26641 5' -54.3 NC_005808.1 + 11631 0.69 0.481821
Target:  5'- gCGGCAugGCuucgaugaccGGCGGgCAGUccuAUCAGGa -3'
miRNA:   3'- gGCCGUugCG----------UUGCCgGUCG---UAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 34551 0.69 0.481821
Target:  5'- aUGGUcgaGCAGCGGUUgAGCGUCGAGg -3'
miRNA:   3'- gGCCGuugCGUUGCCGG-UCGUAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 23618 0.69 0.481821
Target:  5'- gCCGGCGAUGU--CGGCCgaGGcCAUCGAc -3'
miRNA:   3'- -GGCCGUUGCGuuGCCGG--UC-GUAGUUc -5'
26641 5' -54.3 NC_005808.1 + 30191 0.69 0.491276
Target:  5'- gCCGGCGGCGUGuucuggcGCGGCCu-CAUCGc- -3'
miRNA:   3'- -GGCCGUUGCGU-------UGCCGGucGUAGUuc -5'
26641 5' -54.3 NC_005808.1 + 4688 0.69 0.492332
Target:  5'- gCCGGaUAGCGCGGCgagaauGGCCGGCAa---- -3'
miRNA:   3'- -GGCC-GUUGCGUUG------CCGGUCGUaguuc -5'
26641 5' -54.3 NC_005808.1 + 23644 0.69 0.492332
Target:  5'- gCGGUAGC-CGGCGGCgGGCAgCAAc -3'
miRNA:   3'- gGCCGUUGcGUUGCCGgUCGUaGUUc -5'
26641 5' -54.3 NC_005808.1 + 26140 0.69 0.492332
Target:  5'- gCGGCAgauuugGCGCAGCGGCUcGcCGUCu-- -3'
miRNA:   3'- gGCCGU------UGCGUUGCCGGuC-GUAGuuc -5'
26641 5' -54.3 NC_005808.1 + 32589 0.69 0.492332
Target:  5'- aCCGcCGACGCugugaccaAGCuGGCCcGCGUCAAGg -3'
miRNA:   3'- -GGCcGUUGCG--------UUG-CCGGuCGUAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 8912 0.69 0.492332
Target:  5'- aUCGGCGGCGCGcucgAUGGCUucgGGCGUgGAc -3'
miRNA:   3'- -GGCCGUUGCGU----UGCCGG---UCGUAgUUc -5'
26641 5' -54.3 NC_005808.1 + 29021 0.69 0.492332
Target:  5'- aCCaGGCGccGCGCuuCGGCCAG-GUCGAu -3'
miRNA:   3'- -GG-CCGU--UGCGuuGCCGGUCgUAGUUc -5'
26641 5' -54.3 NC_005808.1 + 22390 0.69 0.492332
Target:  5'- cUCGGC-GCGUucggcACGGCCAGCAgCAu- -3'
miRNA:   3'- -GGCCGuUGCGu----UGCCGGUCGUaGUuc -5'
26641 5' -54.3 NC_005808.1 + 21814 0.69 0.502947
Target:  5'- aCCGGCAguuGCAGCGGCgGGUugcucuuguaGUCGAu -3'
miRNA:   3'- -GGCCGUug-CGUUGCCGgUCG----------UAGUUc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.