miRNA display CGI


Results 61 - 80 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26641 5' -54.3 NC_005808.1 + 13293 0.71 0.421229
Target:  5'- gCCGauuGCAGCGCGccGgGGCCGGCGUUg-- -3'
miRNA:   3'- -GGC---CGUUGCGU--UgCCGGUCGUAGuuc -5'
26641 5' -54.3 NC_005808.1 + 13575 0.66 0.669727
Target:  5'- aCGGCAAaccgcuuaccuCGCccaaaggcGCGGUCGGCAUCGc- -3'
miRNA:   3'- gGCCGUU-----------GCGu-------UGCCGGUCGUAGUuc -5'
26641 5' -54.3 NC_005808.1 + 14361 0.68 0.557369
Target:  5'- uUCaGCAACGaCGugGGCC-GCAUCGc- -3'
miRNA:   3'- -GGcCGUUGC-GUugCCGGuCGUAGUuc -5'
26641 5' -54.3 NC_005808.1 + 14761 0.71 0.38348
Target:  5'- uUGGC-GCGCAGCGuGUCGGUGUCGAu -3'
miRNA:   3'- gGCCGuUGCGUUGC-CGGUCGUAGUUc -5'
26641 5' -54.3 NC_005808.1 + 14768 0.66 0.669727
Target:  5'- -gGGCAuggagGCGCAACugcaGGCCgGGCuUCAAGc -3'
miRNA:   3'- ggCCGU-----UGCGUUG----CCGG-UCGuAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 14889 0.72 0.356681
Target:  5'- cCCGGCuuucagggucuGCGCGGCgaucugcugcuGGCCGGCcUCAAGu -3'
miRNA:   3'- -GGCCGu----------UGCGUUG-----------CCGGUCGuAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 14993 0.66 0.666357
Target:  5'- -gGGC-GCGCAGucggcacuugaggcCGGCCAGCAgCAGa -3'
miRNA:   3'- ggCCGuUGCGUU--------------GCCGGUCGUaGUUc -5'
26641 5' -54.3 NC_005808.1 + 15025 0.68 0.590834
Target:  5'- aCCGGCGACuuCAAC-GCgAGCAUCGc- -3'
miRNA:   3'- -GGCCGUUGc-GUUGcCGgUCGUAGUuc -5'
26641 5' -54.3 NC_005808.1 + 15540 0.75 0.228467
Target:  5'- gUGGCGAUGCAAcuggacggcagcuuCGGCCAagggcGCGUCAAGa -3'
miRNA:   3'- gGCCGUUGCGUU--------------GCCGGU-----CGUAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 15594 0.66 0.714228
Target:  5'- gCCGGCAccgUGCAuauCGGCCuGCccAUCAc- -3'
miRNA:   3'- -GGCCGUu--GCGUu--GCCGGuCG--UAGUuc -5'
26641 5' -54.3 NC_005808.1 + 15948 0.66 0.668604
Target:  5'- gCGGCGccuuCGCGuaGGCCAGUccagaauGUCGAGa -3'
miRNA:   3'- gGCCGUu---GCGUugCCGGUCG-------UAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 16132 0.73 0.315012
Target:  5'- aCGGCGccgcGCGCGGCGGCCAcguGCG-CGAa -3'
miRNA:   3'- gGCCGU----UGCGUUGCCGGU---CGUaGUUc -5'
26641 5' -54.3 NC_005808.1 + 16440 0.66 0.680938
Target:  5'- gCCGGCGGCGUugaacACGGCgucgUAG-AUCGGGg -3'
miRNA:   3'- -GGCCGUUGCGu----UGCCG----GUCgUAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 16774 0.66 0.679819
Target:  5'- aCCGGCGACGUgaaGGCGauggucgccaguuGCCAGUugGUCGc- -3'
miRNA:   3'- -GGCCGUUGCG---UUGC-------------CGGUCG--UAGUuc -5'
26641 5' -54.3 NC_005808.1 + 17417 0.68 0.55405
Target:  5'- gCGGCGcccACGUcgcccuugagcaguGGCcccGCCAGCAUCGAGg -3'
miRNA:   3'- gGCCGU---UGCG--------------UUGc--CGGUCGUAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 17682 0.67 0.635918
Target:  5'- gCGGCAAa-CAucgaGGCCGGUAUCGAc -3'
miRNA:   3'- gGCCGUUgcGUug--CCGGUCGUAGUUc -5'
26641 5' -54.3 NC_005808.1 + 17913 0.68 0.579631
Target:  5'- -gGGCGACGaggccaCggUGGCgGGCAUCAAc -3'
miRNA:   3'- ggCCGUUGC------GuuGCCGgUCGUAGUUc -5'
26641 5' -54.3 NC_005808.1 + 18171 0.66 0.690986
Target:  5'- aCCGGaCGGCGCGAaggcguccugguuCGcGCCGGCuUCGGc -3'
miRNA:   3'- -GGCC-GUUGCGUU-------------GC-CGGUCGuAGUUc -5'
26641 5' -54.3 NC_005808.1 + 18321 0.66 0.680938
Target:  5'- aCGGCAguagcgGCGCAGCuuGGUgGGCAUaGGGa -3'
miRNA:   3'- gGCCGU------UGCGUUG--CCGgUCGUAgUUC- -5'
26641 5' -54.3 NC_005808.1 + 18344 0.73 0.291828
Target:  5'- aCCGGCc-CGCuGACGGCCGGCAa---- -3'
miRNA:   3'- -GGCCGuuGCG-UUGCCGGUCGUaguuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.