Results 61 - 80 of 181 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
26641 | 5' | -54.3 | NC_005808.1 | + | 28890 | 0.67 | 0.635918 |
Target: 5'- uCCGGCcgcaacccGACGaCGGCGcGCUGGCugcUCAAGa -3' miRNA: 3'- -GGCCG--------UUGC-GUUGC-CGGUCGu--AGUUC- -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 4886 | 0.67 | 0.635918 |
Target: 5'- aCGGCGACcuguCGcCGGCCAGCAa---- -3' miRNA: 3'- gGCCGUUGc---GUuGCCGGUCGUaguuc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 9442 | 0.67 | 0.647206 |
Target: 5'- gUGGCugcacAAUGCAcGCGGCC-GCAUCAu- -3' miRNA: 3'- gGCCG-----UUGCGU-UGCCGGuCGUAGUuc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 1351 | 0.67 | 0.647206 |
Target: 5'- gCGGCG--GUGugGGCgGGCAUCAc- -3' miRNA: 3'- gGCCGUugCGUugCCGgUCGUAGUuc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 31307 | 0.67 | 0.65848 |
Target: 5'- cCCGGCu-CGUAGCugGGCCGcGCGcCGGGg -3' miRNA: 3'- -GGCCGuuGCGUUG--CCGGU-CGUaGUUC- -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 35238 | 0.67 | 0.65848 |
Target: 5'- aCCGG-AugGC--CGGCCAGCAguUCGGc -3' miRNA: 3'- -GGCCgUugCGuuGCCGGUCGU--AGUUc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 4083 | 0.67 | 0.65848 |
Target: 5'- gCGGCAugACGCuggUGGCCGGCG-CGu- -3' miRNA: 3'- gGCCGU--UGCGuu-GCCGGUCGUaGUuc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 38964 | 0.67 | 0.613342 |
Target: 5'- aCGGCGACGCGcugccccauGCGGC--GCAUCc-- -3' miRNA: 3'- gGCCGUUGCGU---------UGCCGguCGUAGuuc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 20016 | 0.68 | 0.568473 |
Target: 5'- cUCGGCAugGC-GC-GCCuGCAUCAc- -3' miRNA: 3'- -GGCCGUugCGuUGcCGGuCGUAGUuc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 12257 | 0.68 | 0.579631 |
Target: 5'- -aGGCAGCGCG--GGCCGGUuUCGu- -3' miRNA: 3'- ggCCGUUGCGUugCCGGUCGuAGUuc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 17913 | 0.68 | 0.579631 |
Target: 5'- -gGGCGACGaggccaCggUGGCgGGCAUCAAc -3' miRNA: 3'- ggCCGUUGC------GuuGCCGgUCGUAGUUc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 25414 | 0.68 | 0.579631 |
Target: 5'- gCCGGCuAUGCGAacUGGCCGGCcUgGAc -3' miRNA: 3'- -GGCCGuUGCGUU--GCCGGUCGuAgUUc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 15025 | 0.68 | 0.590834 |
Target: 5'- aCCGGCGACuuCAAC-GCgAGCAUCGc- -3' miRNA: 3'- -GGCCGUUGc-GUUGcCGgUCGUAGUuc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 33085 | 0.68 | 0.568473 |
Target: 5'- gCaGCGACGCGGCGGCCuaCAUCc-- -3' miRNA: 3'- gGcCGUUGCGUUGCCGGucGUAGuuc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 39862 | 0.68 | 0.579631 |
Target: 5'- cCCGaGCAGCGCcg-GGCCGcGC-UCAAGc -3' miRNA: 3'- -GGC-CGUUGCGuugCCGGU-CGuAGUUC- -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 2573 | 0.68 | 0.584107 |
Target: 5'- gCCGGCuuugaguucagcuUGCAA-GGCCAGCAgguuggCGAGg -3' miRNA: 3'- -GGCCGuu-----------GCGUUgCCGGUCGUa-----GUUC- -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 11837 | 0.68 | 0.590834 |
Target: 5'- aCCGGCcGCGCcGCGGUUGGCcugggCGAa -3' miRNA: 3'- -GGCCGuUGCGuUGCCGGUCGua---GUUc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 18975 | 0.68 | 0.590834 |
Target: 5'- gCGGaCGACGUAAC-GCCAGUcgcgcaggGUCAGGc -3' miRNA: 3'- gGCC-GUUGCGUUGcCGGUCG--------UAGUUC- -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 24141 | 0.68 | 0.590834 |
Target: 5'- gCCGGCuGCGCGccUGGCcCAGCGccUCGAc -3' miRNA: 3'- -GGCCGuUGCGUu-GCCG-GUCGU--AGUUc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 17417 | 0.68 | 0.55405 |
Target: 5'- gCGGCGcccACGUcgcccuugagcaguGGCcccGCCAGCAUCGAGg -3' miRNA: 3'- gGCCGU---UGCG--------------UUGc--CGGUCGUAGUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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