miRNA display CGI


Results 61 - 80 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26641 5' -54.3 NC_005808.1 + 23666 0.67 0.624627
Target:  5'- aCCGGgGgcugcACGCAugACGGCCAuCGUCGc- -3'
miRNA:   3'- -GGCCgU-----UGCGU--UGCCGGUcGUAGUuc -5'
26641 5' -54.3 NC_005808.1 + 1351 0.67 0.647206
Target:  5'- gCGGCG--GUGugGGCgGGCAUCAc- -3'
miRNA:   3'- gGCCGUugCGUugCCGgUCGUAGUuc -5'
26641 5' -54.3 NC_005808.1 + 13174 0.67 0.647206
Target:  5'- gCCGGCAAccCGgAACGGCuCAagauugcgcGCGUgGAGg -3'
miRNA:   3'- -GGCCGUU--GCgUUGCCG-GU---------CGUAgUUC- -5'
26641 5' -54.3 NC_005808.1 + 28890 0.67 0.635918
Target:  5'- uCCGGCcgcaacccGACGaCGGCGcGCUGGCugcUCAAGa -3'
miRNA:   3'- -GGCCG--------UUGC-GUUGC-CGGUCGu--AGUUC- -5'
26641 5' -54.3 NC_005808.1 + 35238 0.67 0.65848
Target:  5'- aCCGG-AugGC--CGGCCAGCAguUCGGc -3'
miRNA:   3'- -GGCCgUugCGuuGCCGGUCGU--AGUUc -5'
26641 5' -54.3 NC_005808.1 + 31307 0.67 0.65848
Target:  5'- cCCGGCu-CGUAGCugGGCCGcGCGcCGGGg -3'
miRNA:   3'- -GGCCGuuGCGUUG--CCGGU-CGUaGUUC- -5'
26641 5' -54.3 NC_005808.1 + 4083 0.67 0.65848
Target:  5'- gCGGCAugACGCuggUGGCCGGCG-CGu- -3'
miRNA:   3'- gGCCGU--UGCGuu-GCCGGUCGUaGUuc -5'
26641 5' -54.3 NC_005808.1 + 23106 0.67 0.624627
Target:  5'- -aGGCAcaACGCAGCGcGC-AGCAaCAAGc -3'
miRNA:   3'- ggCCGU--UGCGUUGC-CGgUCGUaGUUC- -5'
26641 5' -54.3 NC_005808.1 + 20016 0.68 0.568473
Target:  5'- cUCGGCAugGC-GC-GCCuGCAUCAc- -3'
miRNA:   3'- -GGCCGUugCGuUGcCGGuCGUAGUuc -5'
26641 5' -54.3 NC_005808.1 + 25414 0.68 0.579631
Target:  5'- gCCGGCuAUGCGAacUGGCCGGCcUgGAc -3'
miRNA:   3'- -GGCCGuUGCGUU--GCCGGUCGuAgUUc -5'
26641 5' -54.3 NC_005808.1 + 17913 0.68 0.579631
Target:  5'- -gGGCGACGaggccaCggUGGCgGGCAUCAAc -3'
miRNA:   3'- ggCCGUUGC------GuuGCCGgUCGUAGUUc -5'
26641 5' -54.3 NC_005808.1 + 12257 0.68 0.579631
Target:  5'- -aGGCAGCGCG--GGCCGGUuUCGu- -3'
miRNA:   3'- ggCCGUUGCGUugCCGGUCGuAGUuc -5'
26641 5' -54.3 NC_005808.1 + 33085 0.68 0.568473
Target:  5'- gCaGCGACGCGGCGGCCuaCAUCc-- -3'
miRNA:   3'- gGcCGUUGCGUUGCCGGucGUAGuuc -5'
26641 5' -54.3 NC_005808.1 + 23926 0.68 0.568473
Target:  5'- gCCGGCAuagGCGUGAUGGUCAGgCGccgcccggCGAGg -3'
miRNA:   3'- -GGCCGU---UGCGUUGCCGGUC-GUa-------GUUC- -5'
26641 5' -54.3 NC_005808.1 + 39862 0.68 0.579631
Target:  5'- cCCGaGCAGCGCcg-GGCCGcGC-UCAAGc -3'
miRNA:   3'- -GGC-CGUUGCGuugCCGGU-CGuAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 2573 0.68 0.584107
Target:  5'- gCCGGCuuugaguucagcuUGCAA-GGCCAGCAgguuggCGAGg -3'
miRNA:   3'- -GGCCGuu-----------GCGUUgCCGGUCGUa-----GUUC- -5'
26641 5' -54.3 NC_005808.1 + 11837 0.68 0.590834
Target:  5'- aCCGGCcGCGCcGCGGUUGGCcugggCGAa -3'
miRNA:   3'- -GGCCGuUGCGuUGCCGGUCGua---GUUc -5'
26641 5' -54.3 NC_005808.1 + 18975 0.68 0.590834
Target:  5'- gCGGaCGACGUAAC-GCCAGUcgcgcaggGUCAGGc -3'
miRNA:   3'- gGCC-GUUGCGUUGcCGGUCG--------UAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 24141 0.68 0.590834
Target:  5'- gCCGGCuGCGCGccUGGCcCAGCGccUCGAc -3'
miRNA:   3'- -GGCCGuUGCGUu-GCCG-GUCGU--AGUUc -5'
26641 5' -54.3 NC_005808.1 + 15025 0.68 0.590834
Target:  5'- aCCGGCGACuuCAAC-GCgAGCAUCGc- -3'
miRNA:   3'- -GGCCGUUGc-GUUGcCGgUCGUAGUuc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.