miRNA display CGI


Results 41 - 60 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26641 5' -54.3 NC_005808.1 + 25542 0.71 0.392705
Target:  5'- gCCGGCAGCGCccccguagccGAUGauGUCGGCGUCGGa -3'
miRNA:   3'- -GGCCGUUGCG----------UUGC--CGGUCGUAGUUc -5'
26641 5' -54.3 NC_005808.1 + 37641 0.71 0.392705
Target:  5'- aCCaGCAGCGCGauacGCGGCU-GCAUCGu- -3'
miRNA:   3'- -GGcCGUUGCGU----UGCCGGuCGUAGUuc -5'
26641 5' -54.3 NC_005808.1 + 19032 0.71 0.392705
Target:  5'- gCGGUAGCccugGUAGCGGCCgccggcGGCGUCGAu -3'
miRNA:   3'- gGCCGUUG----CGUUGCCGG------UCGUAGUUc -5'
26641 5' -54.3 NC_005808.1 + 10595 0.71 0.392705
Target:  5'- gUGGCGGCGgaaagcguggcCGGCGGUCAGCAguucgaUCAAGa -3'
miRNA:   3'- gGCCGUUGC-----------GUUGCCGGUCGU------AGUUC- -5'
26641 5' -54.3 NC_005808.1 + 22315 0.71 0.392705
Target:  5'- gCCGGCGaauACGCcaucGCGGCCGacaaccagggccGCGUCAAu -3'
miRNA:   3'- -GGCCGU---UGCGu---UGCCGGU------------CGUAGUUc -5'
26641 5' -54.3 NC_005808.1 + 28464 0.71 0.402073
Target:  5'- aCUGGCGcCGC-GCcGCCGGCGUCGAa -3'
miRNA:   3'- -GGCCGUuGCGuUGcCGGUCGUAGUUc -5'
26641 5' -54.3 NC_005808.1 + 41812 0.71 0.402073
Target:  5'- aCGGCGauuGCGCAGCGGCCcgaucugaccGGCAa---- -3'
miRNA:   3'- gGCCGU---UGCGUUGCCGG----------UCGUaguuc -5'
26641 5' -54.3 NC_005808.1 + 37961 0.71 0.411583
Target:  5'- aUGGcCGACGCAGCguGGcCCAGCAUCc-- -3'
miRNA:   3'- gGCC-GUUGCGUUG--CC-GGUCGUAGuuc -5'
26641 5' -54.3 NC_005808.1 + 7684 0.71 0.411583
Target:  5'- uUGGCGGCGaucuGCGGCCGGUAgcccUCGAa -3'
miRNA:   3'- gGCCGUUGCgu--UGCCGGUCGU----AGUUc -5'
26641 5' -54.3 NC_005808.1 + 28705 0.71 0.411583
Target:  5'- uCUGGCAcuGCGCGGgaacUGGCCGGCcUCAu- -3'
miRNA:   3'- -GGCCGU--UGCGUU----GCCGGUCGuAGUuc -5'
26641 5' -54.3 NC_005808.1 + 31587 0.71 0.418321
Target:  5'- aCGGCAACaCAGCGaggcccagcagcacGCCGGCggCAAGg -3'
miRNA:   3'- gGCCGUUGcGUUGC--------------CGGUCGuaGUUC- -5'
26641 5' -54.3 NC_005808.1 + 13293 0.71 0.421229
Target:  5'- gCCGauuGCAGCGCGccGgGGCCGGCGUUg-- -3'
miRNA:   3'- -GGC---CGUUGCGU--UgCCGGUCGUAGuuc -5'
26641 5' -54.3 NC_005808.1 + 32846 0.71 0.421229
Target:  5'- aCGGCuuCGCcuggccgcaGACGGUCGGCGcCGAGa -3'
miRNA:   3'- gGCCGuuGCG---------UUGCCGGUCGUaGUUC- -5'
26641 5' -54.3 NC_005808.1 + 8516 0.71 0.421229
Target:  5'- aCGGUucgaucuGCGCAAgGGCCaaAGCcUCAAGg -3'
miRNA:   3'- gGCCGu------UGCGUUgCCGG--UCGuAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 4802 0.7 0.431012
Target:  5'- gCCGGCuGGCGCugcgggauuGCuGGCCGGCGaCAGGu -3'
miRNA:   3'- -GGCCG-UUGCGu--------UG-CCGGUCGUaGUUC- -5'
26641 5' -54.3 NC_005808.1 + 13016 0.7 0.431012
Target:  5'- gCCGcGCAGCGCAguggcgACGGCCu-CGUCAu- -3'
miRNA:   3'- -GGC-CGUUGCGU------UGCCGGucGUAGUuc -5'
26641 5' -54.3 NC_005808.1 + 38033 0.7 0.440925
Target:  5'- aCCGaGCAGCGCcuCGGCgacuuCGGCcUCAAGc -3'
miRNA:   3'- -GGC-CGUUGCGuuGCCG-----GUCGuAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 19538 0.7 0.440925
Target:  5'- aCCGGCAccugGCGCAagcugaacuAUGGCguGCAgccCGAGa -3'
miRNA:   3'- -GGCCGU----UGCGU---------UGCCGguCGUa--GUUC- -5'
26641 5' -54.3 NC_005808.1 + 28670 0.7 0.440925
Target:  5'- gCCGGCGgccucgccaGCGCGGCGcGCCA-CGUCGu- -3'
miRNA:   3'- -GGCCGU---------UGCGUUGC-CGGUcGUAGUuc -5'
26641 5' -54.3 NC_005808.1 + 803 0.7 0.440925
Target:  5'- uCCGGCGACGCGccGCGcCCAGCccuugccgaacGUCGGc -3'
miRNA:   3'- -GGCCGUUGCGU--UGCcGGUCG-----------UAGUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.