miRNA display CGI


Results 21 - 40 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26641 5' -54.3 NC_005808.1 + 31093 0.66 0.7032
Target:  5'- cCCGcGCGAuUGCcuCGGCCGGCAa---- -3'
miRNA:   3'- -GGC-CGUU-GCGuuGCCGGUCGUaguuc -5'
26641 5' -54.3 NC_005808.1 + 41423 0.66 0.680938
Target:  5'- aCGGCAGCGCGauACGGCU-GUccuUCAc- -3'
miRNA:   3'- gGCCGUUGCGU--UGCCGGuCGu--AGUuc -5'
26641 5' -54.3 NC_005808.1 + 5273 0.66 0.680938
Target:  5'- aCCGuguugauguucGCGGCGUuguCGGCCacGGCGUCGAu -3'
miRNA:   3'- -GGC-----------CGUUGCGuu-GCCGG--UCGUAGUUc -5'
26641 5' -54.3 NC_005808.1 + 10875 0.66 0.714228
Target:  5'- uUCGGuCGGCGCGAUGcGCgCGGCGUa--- -3'
miRNA:   3'- -GGCC-GUUGCGUUGC-CG-GUCGUAguuc -5'
26641 5' -54.3 NC_005808.1 + 42144 0.66 0.714228
Target:  5'- gCGGUggUGC-GCGGCgAGCAg-AAGg -3'
miRNA:   3'- gGCCGuuGCGuUGCCGgUCGUagUUC- -5'
26641 5' -54.3 NC_005808.1 + 18321 0.66 0.680938
Target:  5'- aCGGCAguagcgGCGCAGCuuGGUgGGCAUaGGGa -3'
miRNA:   3'- gGCCGU------UGCGUUG--CCGgUCGUAgUUC- -5'
26641 5' -54.3 NC_005808.1 + 12497 0.66 0.714228
Target:  5'- gUCGGCGacaucgacaGCGCcACcaaGGaCGGCAUCAAGg -3'
miRNA:   3'- -GGCCGU---------UGCGuUG---CCgGUCGUAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 30421 0.66 0.7032
Target:  5'- cUCGGCAugGCGAUGaGCgCGGg--CAGGg -3'
miRNA:   3'- -GGCCGUugCGUUGC-CG-GUCguaGUUC- -5'
26641 5' -54.3 NC_005808.1 + 7321 0.66 0.7032
Target:  5'- aUGGUcugcgAACGCAGCaGCCgguuGGCGUCGAu -3'
miRNA:   3'- gGCCG-----UUGCGUUGcCGG----UCGUAGUUc -5'
26641 5' -54.3 NC_005808.1 + 18471 0.66 0.714228
Target:  5'- gCCGGCGGCGU--CGGCCGauuCGUCc-- -3'
miRNA:   3'- -GGCCGUUGCGuuGCCGGUc--GUAGuuc -5'
26641 5' -54.3 NC_005808.1 + 16774 0.66 0.679819
Target:  5'- aCCGGCGACGUgaaGGCGauggucgccaguuGCCAGUugGUCGc- -3'
miRNA:   3'- -GGCCGUUGCG---UUGC-------------CGGUCG--UAGUuc -5'
26641 5' -54.3 NC_005808.1 + 14993 0.66 0.666357
Target:  5'- -gGGC-GCGCAGucggcacuugaggcCGGCCAGCAgCAGa -3'
miRNA:   3'- ggCCGuUGCGUU--------------GCCGGUCGUaGUUc -5'
26641 5' -54.3 NC_005808.1 + 19559 0.66 0.714228
Target:  5'- aCGGUu-CGCAGCGGCCuGCc----- -3'
miRNA:   3'- gGCCGuuGCGUUGCCGGuCGuaguuc -5'
26641 5' -54.3 NC_005808.1 + 7246 0.66 0.669727
Target:  5'- cCCGGCuGCGuCAGgGcGUCAGCgcGUCGGGc -3'
miRNA:   3'- -GGCCGuUGC-GUUgC-CGGUCG--UAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 32416 0.66 0.714228
Target:  5'- gCGGCGAcCGCAGCgaccuGGgCGGCgguuGUCGGGa -3'
miRNA:   3'- gGCCGUU-GCGUUG-----CCgGUCG----UAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 11379 0.66 0.714228
Target:  5'- cCCGGCAccucggugGCGaccugAugGGCCAGgGUCu-- -3'
miRNA:   3'- -GGCCGU--------UGCg----UugCCGGUCgUAGuuc -5'
26641 5' -54.3 NC_005808.1 + 42417 0.66 0.685409
Target:  5'- gCCGGCGguagcgaauccccagGCGCuugaGGCaCGGCGUCcAGu -3'
miRNA:   3'- -GGCCGU---------------UGCGuug-CCG-GUCGUAGuUC- -5'
26641 5' -54.3 NC_005808.1 + 30299 0.66 0.718616
Target:  5'- uCgGGUAGCGCcccuGCGaGCCGcuuugcguguacuucGCGUCGGGg -3'
miRNA:   3'- -GgCCGUUGCGu---UGC-CGGU---------------CGUAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 8783 0.67 0.613342
Target:  5'- cCCGGCucaagguGCGCGAcauccgaccCGGCCAGUA-CAc- -3'
miRNA:   3'- -GGCCGu------UGCGUU---------GCCGGUCGUaGUuc -5'
26641 5' -54.3 NC_005808.1 + 26854 0.67 0.647206
Target:  5'- gCgGGCGAauuggGUAAUGGUCGGCGgaagCAAGg -3'
miRNA:   3'- -GgCCGUUg----CGUUGCCGGUCGUa---GUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.