Results 1 - 20 of 181 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26641 | 5' | -54.3 | NC_005808.1 | + | 994 | 0.66 | 0.680938 |
Target: 5'- cCUGGCggUGCcgUGGUucaccgCAGCGUCGAa -3' miRNA: 3'- -GGCCGuuGCGuuGCCG------GUCGUAGUUc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 5273 | 0.66 | 0.680938 |
Target: 5'- aCCGuguugauguucGCGGCGUuguCGGCCacGGCGUCGAu -3' miRNA: 3'- -GGC-----------CGUUGCGuu-GCCGG--UCGUAGUUc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 19351 | 0.66 | 0.714228 |
Target: 5'- cCCaGGCGaccACGCuguucuACGGCgauucCAGCAUCGAc -3' miRNA: 3'- -GG-CCGU---UGCGu-----UGCCG-----GUCGUAGUUc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 7199 | 0.66 | 0.669727 |
Target: 5'- gCCGGgaCAGCGCGauguccACGGC-AGCAUCu-- -3' miRNA: 3'- -GGCC--GUUGCGU------UGCCGgUCGUAGuuc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 12630 | 0.66 | 0.668604 |
Target: 5'- cUCGGCAuCGCuGCuGCCguccuuuGGCGUCGGGu -3' miRNA: 3'- -GGCCGUuGCGuUGcCGG-------UCGUAGUUC- -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 30421 | 0.66 | 0.7032 |
Target: 5'- cUCGGCAugGCGAUGaGCgCGGg--CAGGg -3' miRNA: 3'- -GGCCGUugCGUUGC-CG-GUCguaGUUC- -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 35262 | 0.66 | 0.669727 |
Target: 5'- -aGGCcGCGCucaaGGCCAuGCGucUCAAGg -3' miRNA: 3'- ggCCGuUGCGuug-CCGGU-CGU--AGUUC- -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 449 | 0.66 | 0.7032 |
Target: 5'- -gGGCuGCuGC-GCGGCCAGCuugCGGGc -3' miRNA: 3'- ggCCGuUG-CGuUGCCGGUCGua-GUUC- -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 42144 | 0.66 | 0.714228 |
Target: 5'- gCGGUggUGC-GCGGCgAGCAg-AAGg -3' miRNA: 3'- gGCCGuuGCGuUGCCGgUCGUagUUC- -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 15948 | 0.66 | 0.668604 |
Target: 5'- gCGGCGccuuCGCGuaGGCCAGUccagaauGUCGAGa -3' miRNA: 3'- gGCCGUu---GCGUugCCGGUCG-------UAGUUC- -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 16440 | 0.66 | 0.680938 |
Target: 5'- gCCGGCGGCGUugaacACGGCgucgUAG-AUCGGGg -3' miRNA: 3'- -GGCCGUUGCGu----UGCCG----GUCgUAGUUC- -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 7321 | 0.66 | 0.7032 |
Target: 5'- aUGGUcugcgAACGCAGCaGCCgguuGGCGUCGAu -3' miRNA: 3'- gGCCG-----UUGCGUUGcCGG----UCGUAGUUc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 1043 | 0.66 | 0.690986 |
Target: 5'- gCCGGCGGCaGCAugucgccGCGaaCCGGCGUCcAGu -3' miRNA: 3'- -GGCCGUUG-CGU-------UGCc-GGUCGUAGuUC- -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 10875 | 0.66 | 0.714228 |
Target: 5'- uUCGGuCGGCGCGAUGcGCgCGGCGUa--- -3' miRNA: 3'- -GGCC-GUUGCGUUGC-CG-GUCGUAguuc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 11379 | 0.66 | 0.714228 |
Target: 5'- cCCGGCAccucggugGCGaccugAugGGCCAGgGUCu-- -3' miRNA: 3'- -GGCCGU--------UGCg----UugCCGGUCgUAGuuc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 18321 | 0.66 | 0.680938 |
Target: 5'- aCGGCAguagcgGCGCAGCuuGGUgGGCAUaGGGa -3' miRNA: 3'- gGCCGU------UGCGUUG--CCGgUCGUAgUUC- -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 41423 | 0.66 | 0.680938 |
Target: 5'- aCGGCAGCGCGauACGGCU-GUccuUCAc- -3' miRNA: 3'- gGCCGUUGCGU--UGCCGGuCGu--AGUuc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 23532 | 0.66 | 0.692099 |
Target: 5'- uCCaGGCGGCGCAcGCGGUCgauGGCcUCGGc -3' miRNA: 3'- -GG-CCGUUGCGU-UGCCGG---UCGuAGUUc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 23282 | 0.66 | 0.67085 |
Target: 5'- gUCGGCGuGCGCcacgaaugccuguuuGCGGCCGGCAcuggcCGGGa -3' miRNA: 3'- -GGCCGU-UGCGu--------------UGCCGGUCGUa----GUUC- -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 16774 | 0.66 | 0.679819 |
Target: 5'- aCCGGCGACGUgaaGGCGauggucgccaguuGCCAGUugGUCGc- -3' miRNA: 3'- -GGCCGUUGCG---UUGC-------------CGGUCG--UAGUuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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