miRNA display CGI


Results 1 - 20 of 181 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26641 5' -54.3 NC_005808.1 + 4414 1.12 0.000547
Target:  5'- aCCGGCAACGCAACGGCCAGCAUCAAGg -3'
miRNA:   3'- -GGCCGUUGCGUUGCCGGUCGUAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 28957 0.72 0.348046
Target:  5'- gUCGGCGACggccaGCAACuacGCCAGCAgCGAGg -3'
miRNA:   3'- -GGCCGUUG-----CGUUGc--CGGUCGUaGUUC- -5'
26641 5' -54.3 NC_005808.1 + 25382 0.71 0.38348
Target:  5'- cCCGGCGACG-AGC-GCCGGUggCAGGg -3'
miRNA:   3'- -GGCCGUUGCgUUGcCGGUCGuaGUUC- -5'
26641 5' -54.3 NC_005808.1 + 19351 0.66 0.714228
Target:  5'- cCCaGGCGaccACGCuguucuACGGCgauucCAGCAUCGAc -3'
miRNA:   3'- -GG-CCGU---UGCGu-----UGCCG-----GUCGUAGUUc -5'
26641 5' -54.3 NC_005808.1 + 23518 0.78 0.156175
Target:  5'- gCCGGCGuguacGCGCGAaccauccgcauccCGGCCGGCGUCGc- -3'
miRNA:   3'- -GGCCGU-----UGCGUU-------------GCCGGUCGUAGUuc -5'
26641 5' -54.3 NC_005808.1 + 28637 0.76 0.195131
Target:  5'- gCCGGUGGCcgacgugcgcgccGCGAUGGCCGGCGgccgCAAGg -3'
miRNA:   3'- -GGCCGUUG-------------CGUUGCCGGUCGUa---GUUC- -5'
26641 5' -54.3 NC_005808.1 + 12629 0.76 0.212385
Target:  5'- gCCGcGCAGCGCGA-GGCCGGCAagAAa -3'
miRNA:   3'- -GGC-CGUUGCGUUgCCGGUCGUagUUc -5'
26641 5' -54.3 NC_005808.1 + 38616 0.75 0.218225
Target:  5'- gCGGCGA-GCGGCaGGCCAGCGgccCAGGg -3'
miRNA:   3'- gGCCGUUgCGUUG-CCGGUCGUa--GUUC- -5'
26641 5' -54.3 NC_005808.1 + 37432 0.74 0.270001
Target:  5'- cCCaGCAguucGCGCAGuuCGGCCGGCAggUCGGGg -3'
miRNA:   3'- -GGcCGU----UGCGUU--GCCGGUCGU--AGUUC- -5'
26641 5' -54.3 NC_005808.1 + 8698 0.72 0.33956
Target:  5'- gCCGGCGAccucgccacCGCAGCGGCCgagaAGCG-CAAc -3'
miRNA:   3'- -GGCCGUU---------GCGUUGCCGG----UCGUaGUUc -5'
26641 5' -54.3 NC_005808.1 + 18344 0.73 0.291828
Target:  5'- aCCGGCc-CGCuGACGGCCGGCAa---- -3'
miRNA:   3'- -GGCCGuuGCG-UUGCCGGUCGUaguuc -5'
26641 5' -54.3 NC_005808.1 + 39829 0.75 0.236571
Target:  5'- gCGGCcacGCGCAGCGgcGCCAGCAccagCGAGg -3'
miRNA:   3'- gGCCGu--UGCGUUGC--CGGUCGUa---GUUC- -5'
26641 5' -54.3 NC_005808.1 + 21403 0.85 0.047236
Target:  5'- uUGGCAaccuggGCGCggUGGCCGGCAUCAAGc -3'
miRNA:   3'- gGCCGU------UGCGuuGCCGGUCGUAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 37397 0.73 0.299405
Target:  5'- gUCGGCAAUGCGuCGuuCCAGCGUCGAu -3'
miRNA:   3'- -GGCCGUUGCGUuGCc-GGUCGUAGUUc -5'
26641 5' -54.3 NC_005808.1 + 32606 0.82 0.078302
Target:  5'- gCCGGCGGCaGCAuccUGGCCGGCAUCAc- -3'
miRNA:   3'- -GGCCGUUG-CGUu--GCCGGUCGUAGUuc -5'
26641 5' -54.3 NC_005808.1 + 15540 0.75 0.228467
Target:  5'- gUGGCGAUGCAAcuggacggcagcuuCGGCCAagggcGCGUCAAGa -3'
miRNA:   3'- gGCCGUUGCGUU--------------GCCGGU-----CGUAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 16132 0.73 0.315012
Target:  5'- aCGGCGccgcGCGCGGCGGCCAcguGCG-CGAa -3'
miRNA:   3'- gGCCGU----UGCGUUGCCGGU---CGUaGUUc -5'
26641 5' -54.3 NC_005808.1 + 4336 0.72 0.356681
Target:  5'- aCGGCcaucaccaugccGGCGCuGACGGCCGGCAcCGAc -3'
miRNA:   3'- gGCCG------------UUGCG-UUGCCGGUCGUaGUUc -5'
26641 5' -54.3 NC_005808.1 + 253 0.78 0.143883
Target:  5'- cCCGGCAGCGUGACGGugcCCAGCGacacCGGGg -3'
miRNA:   3'- -GGCCGUUGCGUUGCC---GGUCGUa---GUUC- -5'
26641 5' -54.3 NC_005808.1 + 8454 0.76 0.20668
Target:  5'- aCUGGCuACGCAGCcagcgcgaGGCCGGguUCGAGc -3'
miRNA:   3'- -GGCCGuUGCGUUG--------CCGGUCguAGUUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.