Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26642 | 3' | -65.2 | NC_005808.1 | + | 27893 | 0.66 | 0.188983 |
Target: 5'- gGCCGGCgCCaccGCgGGCAGCGCGcGCgAGg -3' miRNA: 3'- -CGGCUG-GGa--CG-CCGUCGCGCcCGgUU- -5' |
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26642 | 3' | -65.2 | NC_005808.1 | + | 8177 | 0.66 | 0.204241 |
Target: 5'- cGCCGGCC--GC-GCGGUGCaGGGCCu- -3' miRNA: 3'- -CGGCUGGgaCGcCGUCGCG-CCCGGuu -5' |
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26642 | 3' | -65.2 | NC_005808.1 | + | 4095 | 0.66 | 0.204241 |
Target: 5'- cGCuCGACCCgcGCGGCAuGaCGCugguGGCCGg -3' miRNA: 3'- -CG-GCUGGGa-CGCCGU-C-GCGc---CCGGUu -5' |
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26642 | 3' | -65.2 | NC_005808.1 | + | 33812 | 0.66 | 0.203716 |
Target: 5'- cGCCGacguaGCCCaggacggUGCGGUAGCGUucGGCCu- -3' miRNA: 3'- -CGGC-----UGGG-------ACGCCGUCGCGc-CCGGuu -5' |
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26642 | 3' | -65.2 | NC_005808.1 | + | 4661 | 0.66 | 0.193452 |
Target: 5'- gGCUGACCUggGCGGCAuCGCauaacuaGGaGCCAAc -3' miRNA: 3'- -CGGCUGGGa-CGCCGUcGCG-------CC-CGGUU- -5' |
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26642 | 3' | -65.2 | NC_005808.1 | + | 40218 | 0.66 | 0.188983 |
Target: 5'- cGCCGAaaCUGCGGCccaGGCGCucGCCu- -3' miRNA: 3'- -CGGCUggGACGCCG---UCGCGccCGGuu -5' |
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26642 | 3' | -65.2 | NC_005808.1 | + | 28291 | 0.66 | 0.20956 |
Target: 5'- uCCGACCCgcgcGUGGUcgucGGCGU-GGCCGAc -3' miRNA: 3'- cGGCUGGGa---CGCCG----UCGCGcCCGGUU- -5' |
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26642 | 3' | -65.2 | NC_005808.1 | + | 6449 | 0.66 | 0.203716 |
Target: 5'- gGCCGGCcggCCUGCGccugauuGCcGaCGUGGGCCGGu -3' miRNA: 3'- -CGGCUG---GGACGC-------CGuC-GCGCCCGGUU- -5' |
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26642 | 3' | -65.2 | NC_005808.1 | + | 36226 | 0.66 | 0.204241 |
Target: 5'- gGCCGACCUgGUGuaaccCAGCGCcccggccuucGGGCCGGg -3' miRNA: 3'- -CGGCUGGGaCGCc----GUCGCG----------CCCGGUU- -5' |
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26642 | 3' | -65.2 | NC_005808.1 | + | 11379 | 0.66 | 0.188983 |
Target: 5'- cCCGGCaCCU-CGGUGGCGaccugauGGGCCAGg -3' miRNA: 3'- cGGCUG-GGAcGCCGUCGCg------CCCGGUU- -5' |
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26642 | 3' | -65.2 | NC_005808.1 | + | 13312 | 0.66 | 0.193954 |
Target: 5'- gGCCGGCgUUGUaGGCGGCGUaGGCUu- -3' miRNA: 3'- -CGGCUGgGACG-CCGUCGCGcCCGGuu -5' |
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26642 | 3' | -65.2 | NC_005808.1 | + | 24234 | 0.66 | 0.201107 |
Target: 5'- gGCCGAUCUUcucgaugauguccucGCGGCuugccaccuugAGCGUGGcGCCGGa -3' miRNA: 3'- -CGGCUGGGA---------------CGCCG-----------UCGCGCC-CGGUU- -5' |
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26642 | 3' | -65.2 | NC_005808.1 | + | 17635 | 0.66 | 0.204241 |
Target: 5'- uGCCGcAUCgUGCGGCAGUaC-GGCCAc -3' miRNA: 3'- -CGGC-UGGgACGCCGUCGcGcCCGGUu -5' |
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26642 | 3' | -65.2 | NC_005808.1 | + | 17378 | 0.66 | 0.186054 |
Target: 5'- aGCCGGCCCauaugccggaauggaUGCGcGCc-CGCGGcGCCGg -3' miRNA: 3'- -CGGCUGGG---------------ACGC-CGucGCGCC-CGGUu -5' |
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26642 | 3' | -65.2 | NC_005808.1 | + | 432 | 0.67 | 0.165777 |
Target: 5'- gGCCGuACCUUGUcguugGGCuGCuGCGcGGCCAGc -3' miRNA: 3'- -CGGC-UGGGACG-----CCGuCG-CGC-CCGGUU- -5' |
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26642 | 3' | -65.2 | NC_005808.1 | + | 25598 | 0.67 | 0.157232 |
Target: 5'- -gCGGCCCagGCaguggcaaccacGGCGGCGCGGucGCCAGc -3' miRNA: 3'- cgGCUGGGa-CG------------CCGUCGCGCC--CGGUU- -5' |
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26642 | 3' | -65.2 | NC_005808.1 | + | 18270 | 0.67 | 0.157232 |
Target: 5'- cGCCGAgaaCUUGcCGGCcGUcaGCGGGCCGGu -3' miRNA: 3'- -CGGCUg--GGAC-GCCGuCG--CGCCCGGUU- -5' |
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26642 | 3' | -65.2 | NC_005808.1 | + | 25309 | 0.67 | 0.157232 |
Target: 5'- gGCCGGCCCUGCcacCGGCGCucgucGCCGGg -3' miRNA: 3'- -CGGCUGGGACGcc-GUCGCGcc---CGGUU- -5' |
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26642 | 3' | -65.2 | NC_005808.1 | + | 37563 | 0.67 | 0.153111 |
Target: 5'- gGCCGGCCCaGCGucCGGUGCGGcuggcGCCGu -3' miRNA: 3'- -CGGCUGGGaCGCc-GUCGCGCC-----CGGUu -5' |
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26642 | 3' | -65.2 | NC_005808.1 | + | 40805 | 0.67 | 0.161027 |
Target: 5'- cGCCGucuugcagguucaGCCC-GUGGcCGGCGCuGGCCGGg -3' miRNA: 3'- -CGGC-------------UGGGaCGCC-GUCGCGcCCGGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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