miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26642 3' -65.2 NC_005808.1 + 432 0.67 0.165777
Target:  5'- gGCCGuACCUUGUcguugGGCuGCuGCGcGGCCAGc -3'
miRNA:   3'- -CGGC-UGGGACG-----CCGuCG-CGC-CCGGUU- -5'
26642 3' -65.2 NC_005808.1 + 679 0.69 0.123525
Target:  5'- gGCCG-CCUa-CGGCGGCGCcGGCCGGg -3'
miRNA:   3'- -CGGCuGGGacGCCGUCGCGcCCGGUU- -5'
26642 3' -65.2 NC_005808.1 + 1243 0.69 0.113865
Target:  5'- gGCCGACCCcgGCGGCgagacuauguggGGCGUGaccGCCGc -3'
miRNA:   3'- -CGGCUGGGa-CGCCG------------UCGCGCc--CGGUu -5'
26642 3' -65.2 NC_005808.1 + 1367 0.76 0.03424
Target:  5'- gGCCGucGCCCUgggcGCGGCGGUGUGGGCgGg -3'
miRNA:   3'- -CGGC--UGGGA----CGCCGUCGCGCCCGgUu -5'
26642 3' -65.2 NC_005808.1 + 2206 0.67 0.152704
Target:  5'- uGCCGacGCCCUcgucggguaGCaccacgcgcagcaGGCGGCGCGuGGCCGc -3'
miRNA:   3'- -CGGC--UGGGA---------CG-------------CCGUCGCGC-CCGGUu -5'
26642 3' -65.2 NC_005808.1 + 4018 0.7 0.096629
Target:  5'- cGCCGGCCaccaGCGucauGCcGCGCGGGUCGAg -3'
miRNA:   3'- -CGGCUGGga--CGC----CGuCGCGCCCGGUU- -5'
26642 3' -65.2 NC_005808.1 + 4095 0.66 0.204241
Target:  5'- cGCuCGACCCgcGCGGCAuGaCGCugguGGCCGg -3'
miRNA:   3'- -CG-GCUGGGa-CGCCGU-C-GCGc---CCGGUu -5'
26642 3' -65.2 NC_005808.1 + 4661 0.66 0.193452
Target:  5'- gGCUGACCUggGCGGCAuCGCauaacuaGGaGCCAAc -3'
miRNA:   3'- -CGGCUGGGa-CGCCGUcGCG-------CC-CGGUU- -5'
26642 3' -65.2 NC_005808.1 + 4697 1.06 0.00011
Target:  5'- uGCCGACCCUGCGGCAGCGCGGGCCAAc -3'
miRNA:   3'- -CGGCUGGGACGCCGUCGCGCCCGGUU- -5'
26642 3' -65.2 NC_005808.1 + 4849 0.68 0.141329
Target:  5'- aGCCGGCgugCUGgGcGCAGUGUGGGCgAAc -3'
miRNA:   3'- -CGGCUGg--GACgC-CGUCGCGCCCGgUU- -5'
26642 3' -65.2 NC_005808.1 + 6369 0.67 0.170204
Target:  5'- aCCGGCCCacGuCGGCaaucaGGCGCaGGCCGg -3'
miRNA:   3'- cGGCUGGGa-C-GCCG-----UCGCGcCCGGUu -5'
26642 3' -65.2 NC_005808.1 + 6449 0.66 0.203716
Target:  5'- gGCCGGCcggCCUGCGccugauuGCcGaCGUGGGCCGGu -3'
miRNA:   3'- -CGGCUG---GGACGC-------CGuC-GCGCCCGGUU- -5'
26642 3' -65.2 NC_005808.1 + 8177 0.66 0.204241
Target:  5'- cGCCGGCC--GC-GCGGUGCaGGGCCu- -3'
miRNA:   3'- -CGGCUGGgaCGcCGUCGCG-CCCGGuu -5'
26642 3' -65.2 NC_005808.1 + 8470 0.69 0.120224
Target:  5'- cGCaCGGCCCUGgccgacUGGCuacgcagccAGCGCGaGGCCGGg -3'
miRNA:   3'- -CG-GCUGGGAC------GCCG---------UCGCGC-CCGGUU- -5'
26642 3' -65.2 NC_005808.1 + 8627 0.67 0.170204
Target:  5'- cUCGGCCgCUGCGGUGGCGaGGucGCCGg -3'
miRNA:   3'- cGGCUGG-GACGCCGUCGCgCC--CGGUu -5'
26642 3' -65.2 NC_005808.1 + 8831 0.67 0.174736
Target:  5'- gGUCGGgCCaGCcGCAaCGCGGGCCAGc -3'
miRNA:   3'- -CGGCUgGGaCGcCGUcGCGCCCGGUU- -5'
26642 3' -65.2 NC_005808.1 + 9192 0.69 0.123525
Target:  5'- cGUCGACguuggCCUGCucGGCGGCGCGGcGCaCGu -3'
miRNA:   3'- -CGGCUG-----GGACG--CCGUCGCGCC-CG-GUu -5'
26642 3' -65.2 NC_005808.1 + 10674 0.68 0.130382
Target:  5'- cGCCGugUCcaguugcgucuUGaCGGCAGCGCGcacggccucGGCCGAu -3'
miRNA:   3'- -CGGCugGG-----------AC-GCCGUCGCGC---------CCGGUU- -5'
26642 3' -65.2 NC_005808.1 + 11379 0.66 0.188983
Target:  5'- cCCGGCaCCU-CGGUGGCGaccugauGGGCCAGg -3'
miRNA:   3'- cGGCUG-GGAcGCCGUCGCg------CCCGGUU- -5'
26642 3' -65.2 NC_005808.1 + 12080 0.67 0.174736
Target:  5'- cGCCGGCCa--CGGCcGCGCugcuGGCCGAc -3'
miRNA:   3'- -CGGCUGGgacGCCGuCGCGc---CCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.