miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26642 3' -65.2 NC_005808.1 + 42135 0.71 0.07964
Target:  5'- gGCCGAauaCCU-CGGaCGuGCGCGGGCCGc -3'
miRNA:   3'- -CGGCUg--GGAcGCC-GU-CGCGCCCGGUu -5'
26642 3' -65.2 NC_005808.1 + 41598 0.67 0.174736
Target:  5'- cCCGGCCa-GUGGCgcgGGCaGCGGGCUGAc -3'
miRNA:   3'- cGGCUGGgaCGCCG---UCG-CGCCCGGUU- -5'
26642 3' -65.2 NC_005808.1 + 40901 0.71 0.08654
Target:  5'- gGCCGGCCUgcGCcuGGC-GCGuCGGGCCGAu -3'
miRNA:   3'- -CGGCUGGGa-CG--CCGuCGC-GCCCGGUU- -5'
26642 3' -65.2 NC_005808.1 + 40805 0.67 0.161027
Target:  5'- cGCCGucuugcagguucaGCCC-GUGGcCGGCGCuGGCCGGg -3'
miRNA:   3'- -CGGC-------------UGGGaCGCC-GUCGCGcCCGGUU- -5'
26642 3' -65.2 NC_005808.1 + 40218 0.66 0.188983
Target:  5'- cGCCGAaaCUGCGGCccaGGCGCucGCCu- -3'
miRNA:   3'- -CGGCUggGACGCCG---UCGCGccCGGuu -5'
26642 3' -65.2 NC_005808.1 + 39659 0.67 0.179375
Target:  5'- -aCGugCCgcGCGacGCGGUGUGGGCCGg -3'
miRNA:   3'- cgGCugGGa-CGC--CGUCGCGCCCGGUu -5'
26642 3' -65.2 NC_005808.1 + 38624 0.7 0.104914
Target:  5'- aGCCGGCC--GCGGCgAGCGgCaGGCCAGc -3'
miRNA:   3'- -CGGCUGGgaCGCCG-UCGC-GcCCGGUU- -5'
26642 3' -65.2 NC_005808.1 + 37563 0.67 0.153111
Target:  5'- gGCCGGCCCaGCGucCGGUGCGGcuggcGCCGu -3'
miRNA:   3'- -CGGCUGGGaCGCc-GUCGCGCC-----CGGUu -5'
26642 3' -65.2 NC_005808.1 + 36226 0.66 0.204241
Target:  5'- gGCCGACCUgGUGuaaccCAGCGCcccggccuucGGGCCGGg -3'
miRNA:   3'- -CGGCUGGGaCGCc----GUCGCG----------CCCGGUU- -5'
26642 3' -65.2 NC_005808.1 + 35435 0.7 0.094007
Target:  5'- ---aGCCCUGCaacuucGGCcacuGGCGCGGGCCGAu -3'
miRNA:   3'- cggcUGGGACG------CCG----UCGCGCCCGGUU- -5'
26642 3' -65.2 NC_005808.1 + 34305 0.67 0.170204
Target:  5'- cGCUGGCUgcaCUGCcccGGCAGCGUGGcccuggaaGCCGAa -3'
miRNA:   3'- -CGGCUGG---GACG---CCGUCGCGCC--------CGGUU- -5'
26642 3' -65.2 NC_005808.1 + 33812 0.66 0.203716
Target:  5'- cGCCGacguaGCCCaggacggUGCGGUAGCGUucGGCCu- -3'
miRNA:   3'- -CGGC-----UGGG-------ACGCCGUCGCGc-CCGGuu -5'
26642 3' -65.2 NC_005808.1 + 32916 0.67 0.157232
Target:  5'- cGCCGACCguCUGCGGCcaGGCGaa-GCCGu -3'
miRNA:   3'- -CGGCUGG--GACGCCG--UCGCgccCGGUu -5'
26642 3' -65.2 NC_005808.1 + 32379 0.71 0.08188
Target:  5'- cGCCGGCCUUGaUGGCGGCGaUGaGGUCGc -3'
miRNA:   3'- -CGGCUGGGAC-GCCGUCGC-GC-CCGGUu -5'
26642 3' -65.2 NC_005808.1 + 31028 0.75 0.042963
Target:  5'- uGCCGGCCga--GGCAaucGCGCGGGCCAAc -3'
miRNA:   3'- -CGGCUGGgacgCCGU---CGCGCCCGGUU- -5'
26642 3' -65.2 NC_005808.1 + 30564 0.71 0.075336
Target:  5'- uGCCGGCCgcuguagaUGCGGCAGaugGUGGGCUGGg -3'
miRNA:   3'- -CGGCUGGg-------ACGCCGUCg--CGCCCGGUU- -5'
26642 3' -65.2 NC_005808.1 + 28545 0.72 0.065347
Target:  5'- gGCaCGACCUUGCGGCcgccggccaucgcGGCGCGcacgucGGCCAc -3'
miRNA:   3'- -CG-GCUGGGACGCCG-------------UCGCGC------CCGGUu -5'
26642 3' -65.2 NC_005808.1 + 28397 0.68 0.133941
Target:  5'- uUCGACgC--CGGCGGCGCGGcGCCAGu -3'
miRNA:   3'- cGGCUGgGacGCCGUCGCGCC-CGGUU- -5'
26642 3' -65.2 NC_005808.1 + 28291 0.66 0.20956
Target:  5'- uCCGACCCgcgcGUGGUcgucGGCGU-GGCCGAc -3'
miRNA:   3'- cGGCUGGGa---CGCCG----UCGCGcCCGGUU- -5'
26642 3' -65.2 NC_005808.1 + 27893 0.66 0.188983
Target:  5'- gGCCGGCgCCaccGCgGGCAGCGCGcGCgAGg -3'
miRNA:   3'- -CGGCUG-GGa--CG-CCGUCGCGCcCGgUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.