miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26642 3' -65.2 NC_005808.1 + 41598 0.67 0.174736
Target:  5'- cCCGGCCa-GUGGCgcgGGCaGCGGGCUGAc -3'
miRNA:   3'- cGGCUGGgaCGCCG---UCG-CGCCCGGUU- -5'
26642 3' -65.2 NC_005808.1 + 18270 0.67 0.157232
Target:  5'- cGCCGAgaaCUUGcCGGCcGUcaGCGGGCCGGu -3'
miRNA:   3'- -CGGCUg--GGAC-GCCGuCG--CGCCCGGUU- -5'
26642 3' -65.2 NC_005808.1 + 25598 0.67 0.157232
Target:  5'- -gCGGCCCagGCaguggcaaccacGGCGGCGCGGucGCCAGc -3'
miRNA:   3'- cgGCUGGGa-CG------------CCGUCGCGCC--CGGUU- -5'
26642 3' -65.2 NC_005808.1 + 432 0.67 0.165777
Target:  5'- gGCCGuACCUUGUcguugGGCuGCuGCGcGGCCAGc -3'
miRNA:   3'- -CGGC-UGGGACG-----CCGuCG-CGC-CCGGUU- -5'
26642 3' -65.2 NC_005808.1 + 8627 0.67 0.170204
Target:  5'- cUCGGCCgCUGCGGUGGCGaGGucGCCGg -3'
miRNA:   3'- cGGCUGG-GACGCCGUCGCgCC--CGGUu -5'
26642 3' -65.2 NC_005808.1 + 34305 0.67 0.170204
Target:  5'- cGCUGGCUgcaCUGCcccGGCAGCGUGGcccuggaaGCCGAa -3'
miRNA:   3'- -CGGCUGG---GACG---CCGUCGCGCC--------CGGUU- -5'
26642 3' -65.2 NC_005808.1 + 23561 0.67 0.170204
Target:  5'- gGCCGACaucGcCGGCAgGUGCGGGCgGGg -3'
miRNA:   3'- -CGGCUGggaC-GCCGU-CGCGCCCGgUU- -5'
26642 3' -65.2 NC_005808.1 + 6369 0.67 0.170204
Target:  5'- aCCGGCCCacGuCGGCaaucaGGCGCaGGCCGg -3'
miRNA:   3'- cGGCUGGGa-C-GCCG-----UCGCGcCCGGUu -5'
26642 3' -65.2 NC_005808.1 + 8831 0.67 0.174736
Target:  5'- gGUCGGgCCaGCcGCAaCGCGGGCCAGc -3'
miRNA:   3'- -CGGCUgGGaCGcCGUcGCGCCCGGUU- -5'
26642 3' -65.2 NC_005808.1 + 25309 0.67 0.157232
Target:  5'- gGCCGGCCCUGCcacCGGCGCucgucGCCGGg -3'
miRNA:   3'- -CGGCUGGGACGcc-GUCGCGcc---CGGUU- -5'
26642 3' -65.2 NC_005808.1 + 2206 0.67 0.152704
Target:  5'- uGCCGacGCCCUcgucggguaGCaccacgcgcagcaGGCGGCGCGuGGCCGc -3'
miRNA:   3'- -CGGC--UGGGA---------CG-------------CCGUCGCGC-CCGGUu -5'
26642 3' -65.2 NC_005808.1 + 28397 0.68 0.133941
Target:  5'- uUCGACgC--CGGCGGCGCGGcGCCAGu -3'
miRNA:   3'- cGGCUGgGacGCCGUCGCGCC-CGGUU- -5'
26642 3' -65.2 NC_005808.1 + 28545 0.72 0.065347
Target:  5'- gGCaCGACCUUGCGGCcgccggccaucgcGGCGCGcacgucGGCCAc -3'
miRNA:   3'- -CG-GCUGGGACGCCG-------------UCGCGC------CCGGUu -5'
26642 3' -65.2 NC_005808.1 + 30564 0.71 0.075336
Target:  5'- uGCCGGCCgcuguagaUGCGGCAGaugGUGGGCUGGg -3'
miRNA:   3'- -CGGCUGGg-------ACGCCGUCg--CGCCCGGUU- -5'
26642 3' -65.2 NC_005808.1 + 27830 0.7 0.091452
Target:  5'- cGCUG-CCC-GCGGUGGCGCcGGCCGc -3'
miRNA:   3'- -CGGCuGGGaCGCCGUCGCGcCCGGUu -5'
26642 3' -65.2 NC_005808.1 + 4018 0.7 0.096629
Target:  5'- cGCCGGCCaccaGCGucauGCcGCGCGGGUCGAg -3'
miRNA:   3'- -CGGCUGGga--CGC----CGuCGCGCCCGGUU- -5'
26642 3' -65.2 NC_005808.1 + 24422 0.69 0.110805
Target:  5'- aGCCGGCCCgauuUGuCGGUgccGCGCGcGGCCu- -3'
miRNA:   3'- -CGGCUGGG----AC-GCCGu--CGCGC-CCGGuu -5'
26642 3' -65.2 NC_005808.1 + 679 0.69 0.123525
Target:  5'- gGCCG-CCUa-CGGCGGCGCcGGCCGGg -3'
miRNA:   3'- -CGGCuGGGacGCCGUCGCGcCCGGUU- -5'
26642 3' -65.2 NC_005808.1 + 9192 0.69 0.123525
Target:  5'- cGUCGACguuggCCUGCucGGCGGCGCGGcGCaCGu -3'
miRNA:   3'- -CGGCUG-----GGACG--CCGUCGCGCC-CG-GUu -5'
26642 3' -65.2 NC_005808.1 + 10674 0.68 0.130382
Target:  5'- cGCCGugUCcaguugcgucuUGaCGGCAGCGCGcacggccucGGCCGAu -3'
miRNA:   3'- -CGGCugGG-----------AC-GCCGUCGCGC---------CCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.