Results 21 - 40 of 56 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26642 | 3' | -65.2 | NC_005808.1 | + | 24422 | 0.69 | 0.110805 |
Target: 5'- aGCCGGCCCgauuUGuCGGUgccGCGCGcGGCCu- -3' miRNA: 3'- -CGGCUGGG----AC-GCCGu--CGCGC-CCGGuu -5' |
|||||||
26642 | 3' | -65.2 | NC_005808.1 | + | 679 | 0.69 | 0.123525 |
Target: 5'- gGCCG-CCUa-CGGCGGCGCcGGCCGGg -3' miRNA: 3'- -CGGCuGGGacGCCGUCGCGcCCGGUU- -5' |
|||||||
26642 | 3' | -65.2 | NC_005808.1 | + | 9192 | 0.69 | 0.123525 |
Target: 5'- cGUCGACguuggCCUGCucGGCGGCGCGGcGCaCGu -3' miRNA: 3'- -CGGCUG-----GGACG--CCGUCGCGCC-CG-GUu -5' |
|||||||
26642 | 3' | -65.2 | NC_005808.1 | + | 10674 | 0.68 | 0.130382 |
Target: 5'- cGCCGugUCcaguugcgucuUGaCGGCAGCGCGcacggccucGGCCGAu -3' miRNA: 3'- -CGGCugGG-----------AC-GCCGUCGCGC---------CCGGUU- -5' |
|||||||
26642 | 3' | -65.2 | NC_005808.1 | + | 28397 | 0.68 | 0.133941 |
Target: 5'- uUCGACgC--CGGCGGCGCGGcGCCAGu -3' miRNA: 3'- cGGCUGgGacGCCGUCGCGCC-CGGUU- -5' |
|||||||
26642 | 3' | -65.2 | NC_005808.1 | + | 2206 | 0.67 | 0.152704 |
Target: 5'- uGCCGacGCCCUcgucggguaGCaccacgcgcagcaGGCGGCGCGuGGCCGc -3' miRNA: 3'- -CGGC--UGGGA---------CG-------------CCGUCGCGC-CCGGUu -5' |
|||||||
26642 | 3' | -65.2 | NC_005808.1 | + | 25309 | 0.67 | 0.157232 |
Target: 5'- gGCCGGCCCUGCcacCGGCGCucgucGCCGGg -3' miRNA: 3'- -CGGCUGGGACGcc-GUCGCGcc---CGGUU- -5' |
|||||||
26642 | 3' | -65.2 | NC_005808.1 | + | 35435 | 0.7 | 0.094007 |
Target: 5'- ---aGCCCUGCaacuucGGCcacuGGCGCGGGCCGAu -3' miRNA: 3'- cggcUGGGACG------CCG----UCGCGCCCGGUU- -5' |
|||||||
26642 | 3' | -65.2 | NC_005808.1 | + | 22896 | 0.7 | 0.102081 |
Target: 5'- uGUCGGCUgU-CGGCAGCGCggcgaagucGGGCCAGu -3' miRNA: 3'- -CGGCUGGgAcGCCGUCGCG---------CCCGGUU- -5' |
|||||||
26642 | 3' | -65.2 | NC_005808.1 | + | 38624 | 0.7 | 0.104914 |
Target: 5'- aGCCGGCC--GCGGCgAGCGgCaGGCCAGc -3' miRNA: 3'- -CGGCUGGgaCGCCG-UCGC-GcCCGGUU- -5' |
|||||||
26642 | 3' | -65.2 | NC_005808.1 | + | 1243 | 0.69 | 0.113865 |
Target: 5'- gGCCGACCCcgGCGGCgagacuauguggGGCGUGaccGCCGc -3' miRNA: 3'- -CGGCUGGGa-CGCCG------------UCGCGCc--CGGUu -5' |
|||||||
26642 | 3' | -65.2 | NC_005808.1 | + | 8470 | 0.69 | 0.120224 |
Target: 5'- cGCaCGGCCCUGgccgacUGGCuacgcagccAGCGCGaGGCCGGg -3' miRNA: 3'- -CG-GCUGGGAC------GCCG---------UCGCGC-CCGGUU- -5' |
|||||||
26642 | 3' | -65.2 | NC_005808.1 | + | 14936 | 0.7 | 0.090699 |
Target: 5'- aGCCGggcaacuuaaaggcGCCCaGCGuGCGGCGCuGGCCGc -3' miRNA: 3'- -CGGC--------------UGGGaCGC-CGUCGCGcCCGGUu -5' |
|||||||
26642 | 3' | -65.2 | NC_005808.1 | + | 40901 | 0.71 | 0.08654 |
Target: 5'- gGCCGGCCUgcGCcuGGC-GCGuCGGGCCGAu -3' miRNA: 3'- -CGGCUGGGa-CG--CCGuCGC-GCCCGGUU- -5' |
|||||||
26642 | 3' | -65.2 | NC_005808.1 | + | 32379 | 0.71 | 0.08188 |
Target: 5'- cGCCGGCCUUGaUGGCGGCGaUGaGGUCGc -3' miRNA: 3'- -CGGCUGGGAC-GCCGUCGC-GC-CCGGUu -5' |
|||||||
26642 | 3' | -65.2 | NC_005808.1 | + | 42135 | 0.71 | 0.07964 |
Target: 5'- gGCCGAauaCCU-CGGaCGuGCGCGGGCCGc -3' miRNA: 3'- -CGGCUg--GGAcGCC-GU-CGCGCCCGGUu -5' |
|||||||
26642 | 3' | -65.2 | NC_005808.1 | + | 27503 | 0.73 | 0.053846 |
Target: 5'- cGCCaGGgCCUGCGGCcgccgGGCGCGGugcGCCAGg -3' miRNA: 3'- -CGG-CUgGGACGCCG-----UCGCGCC---CGGUU- -5' |
|||||||
26642 | 3' | -65.2 | NC_005808.1 | + | 1367 | 0.76 | 0.03424 |
Target: 5'- gGCCGucGCCCUgggcGCGGCGGUGUGGGCgGg -3' miRNA: 3'- -CGGC--UGGGA----CGCCGUCGCGCCCGgUu -5' |
|||||||
26642 | 3' | -65.2 | NC_005808.1 | + | 12270 | 0.83 | 0.009432 |
Target: 5'- cCCGACCagggGCaGGCAGCGCGGGCCGGu -3' miRNA: 3'- cGGCUGGga--CG-CCGUCGCGCCCGGUU- -5' |
|||||||
26642 | 3' | -65.2 | NC_005808.1 | + | 28291 | 0.66 | 0.20956 |
Target: 5'- uCCGACCCgcgcGUGGUcgucGGCGU-GGCCGAc -3' miRNA: 3'- cGGCUGGGa---CGCCG----UCGCGcCCGGUU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home