miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26642 3' -65.2 NC_005808.1 + 12270 0.83 0.009432
Target:  5'- cCCGACCagggGCaGGCAGCGCGGGCCGGu -3'
miRNA:   3'- cGGCUGGga--CG-CCGUCGCGCCCGGUU- -5'
26642 3' -65.2 NC_005808.1 + 13247 0.68 0.133941
Target:  5'- cGCCGGCCaaggGCGccCAGCGC-GGCCGAc -3'
miRNA:   3'- -CGGCUGGga--CGCc-GUCGCGcCCGGUU- -5'
26642 3' -65.2 NC_005808.1 + 13312 0.66 0.193954
Target:  5'- gGCCGGCgUUGUaGGCGGCGUaGGCUu- -3'
miRNA:   3'- -CGGCUGgGACG-CCGUCGCGcCCGGuu -5'
26642 3' -65.2 NC_005808.1 + 14936 0.7 0.090699
Target:  5'- aGCCGggcaacuuaaaggcGCCCaGCGuGCGGCGCuGGCCGc -3'
miRNA:   3'- -CGGC--------------UGGGaCGC-CGUCGCGcCCGGUu -5'
26642 3' -65.2 NC_005808.1 + 17378 0.66 0.186054
Target:  5'- aGCCGGCCCauaugccggaauggaUGCGcGCc-CGCGGcGCCGg -3'
miRNA:   3'- -CGGCUGGG---------------ACGC-CGucGCGCC-CGGUu -5'
26642 3' -65.2 NC_005808.1 + 17635 0.66 0.204241
Target:  5'- uGCCGcAUCgUGCGGCAGUaC-GGCCAc -3'
miRNA:   3'- -CGGC-UGGgACGCCGUCGcGcCCGGUu -5'
26642 3' -65.2 NC_005808.1 + 18270 0.67 0.157232
Target:  5'- cGCCGAgaaCUUGcCGGCcGUcaGCGGGCCGGu -3'
miRNA:   3'- -CGGCUg--GGAC-GCCGuCG--CGCCCGGUU- -5'
26642 3' -65.2 NC_005808.1 + 22896 0.7 0.102081
Target:  5'- uGUCGGCUgU-CGGCAGCGCggcgaagucGGGCCAGu -3'
miRNA:   3'- -CGGCUGGgAcGCCGUCGCG---------CCCGGUU- -5'
26642 3' -65.2 NC_005808.1 + 23561 0.67 0.170204
Target:  5'- gGCCGACaucGcCGGCAgGUGCGGGCgGGg -3'
miRNA:   3'- -CGGCUGggaC-GCCGU-CGCGCCCGgUU- -5'
26642 3' -65.2 NC_005808.1 + 24234 0.66 0.201107
Target:  5'- gGCCGAUCUUcucgaugauguccucGCGGCuugccaccuugAGCGUGGcGCCGGa -3'
miRNA:   3'- -CGGCUGGGA---------------CGCCG-----------UCGCGCC-CGGUU- -5'
26642 3' -65.2 NC_005808.1 + 24422 0.69 0.110805
Target:  5'- aGCCGGCCCgauuUGuCGGUgccGCGCGcGGCCu- -3'
miRNA:   3'- -CGGCUGGG----AC-GCCGu--CGCGC-CCGGuu -5'
26642 3' -65.2 NC_005808.1 + 25309 0.67 0.157232
Target:  5'- gGCCGGCCCUGCcacCGGCGCucgucGCCGGg -3'
miRNA:   3'- -CGGCUGGGACGcc-GUCGCGcc---CGGUU- -5'
26642 3' -65.2 NC_005808.1 + 25593 0.67 0.181261
Target:  5'- cGCUG-CCg-GCGGCGGCaaaaccgaccucaucGCGGGCCu- -3'
miRNA:   3'- -CGGCuGGgaCGCCGUCG---------------CGCCCGGuu -5'
26642 3' -65.2 NC_005808.1 + 25598 0.67 0.157232
Target:  5'- -gCGGCCCagGCaguggcaaccacGGCGGCGCGGucGCCAGc -3'
miRNA:   3'- cgGCUGGGa-CG------------CCGUCGCGCC--CGGUU- -5'
26642 3' -65.2 NC_005808.1 + 27503 0.73 0.053846
Target:  5'- cGCCaGGgCCUGCGGCcgccgGGCGCGGugcGCCAGg -3'
miRNA:   3'- -CGG-CUgGGACGCCG-----UCGCGCC---CGGUU- -5'
26642 3' -65.2 NC_005808.1 + 27830 0.7 0.091452
Target:  5'- cGCUG-CCC-GCGGUGGCGCcGGCCGc -3'
miRNA:   3'- -CGGCuGGGaCGCCGUCGCGcCCGGUu -5'
26642 3' -65.2 NC_005808.1 + 27893 0.66 0.188983
Target:  5'- gGCCGGCgCCaccGCgGGCAGCGCGcGCgAGg -3'
miRNA:   3'- -CGGCUG-GGa--CG-CCGUCGCGCcCGgUU- -5'
26642 3' -65.2 NC_005808.1 + 28291 0.66 0.20956
Target:  5'- uCCGACCCgcgcGUGGUcgucGGCGU-GGCCGAc -3'
miRNA:   3'- cGGCUGGGa---CGCCG----UCGCGcCCGGUU- -5'
26642 3' -65.2 NC_005808.1 + 28397 0.68 0.133941
Target:  5'- uUCGACgC--CGGCGGCGCGGcGCCAGu -3'
miRNA:   3'- cGGCUGgGacGCCGUCGCGCC-CGGUU- -5'
26642 3' -65.2 NC_005808.1 + 28545 0.72 0.065347
Target:  5'- gGCaCGACCUUGCGGCcgccggccaucgcGGCGCGcacgucGGCCAc -3'
miRNA:   3'- -CG-GCUGGGACGCCG-------------UCGCGC------CCGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.