miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26642 5' -55.8 NC_005808.1 + 41326 0.7 0.372243
Target:  5'- cGCUGGCC-GGGaauacCGGCGcUCGCcgGACg -3'
miRNA:   3'- cCGACUGGaCCC-----GCCGU-AGCGuaUUG- -5'
26642 5' -55.8 NC_005808.1 + 12267 0.66 0.576311
Target:  5'- cGGUagUGuCCUGGGCGG-GUUGC-UGGCc -3'
miRNA:   3'- -CCG--ACuGGACCCGCCgUAGCGuAUUG- -5'
26642 5' -55.8 NC_005808.1 + 9312 0.67 0.554146
Target:  5'- cGGC-GACCU-GGCGGCGcacgucggCGCGgcgGGCg -3'
miRNA:   3'- -CCGaCUGGAcCCGCCGUa-------GCGUa--UUG- -5'
26642 5' -55.8 NC_005808.1 + 1998 0.67 0.543156
Target:  5'- uGGCUGAUCuUGaGGCccaGGCGcUCGC-UGGCg -3'
miRNA:   3'- -CCGACUGG-AC-CCG---CCGU-AGCGuAUUG- -5'
26642 5' -55.8 NC_005808.1 + 33916 0.67 0.543156
Target:  5'- cGGCgcacACCUGGGCGcGCAgcagcCGCu--GCa -3'
miRNA:   3'- -CCGac--UGGACCCGC-CGUa----GCGuauUG- -5'
26642 5' -55.8 NC_005808.1 + 36154 0.67 0.499996
Target:  5'- cGGCgacGCCUucgcGGGCGGUgguGUCGCG-AGCg -3'
miRNA:   3'- -CCGac-UGGA----CCCGCCG---UAGCGUaUUG- -5'
26642 5' -55.8 NC_005808.1 + 37895 0.68 0.448317
Target:  5'- gGGCU-ACgaGGGCGGCGUCGg----- -3'
miRNA:   3'- -CCGAcUGgaCCCGCCGUAGCguauug -5'
26642 5' -55.8 NC_005808.1 + 4531 0.68 0.448317
Target:  5'- uGGC-GugCUGGGCGGUcgUGCcgccGCg -3'
miRNA:   3'- -CCGaCugGACCCGCCGuaGCGuau-UG- -5'
26642 5' -55.8 NC_005808.1 + 29175 0.68 0.437345
Target:  5'- aGGCUuccucGACUUGGGCcucggugaugaccGGCAggucggacgcgCGCAUGGCg -3'
miRNA:   3'- -CCGA-----CUGGACCCG-------------CCGUa----------GCGUAUUG- -5'
26642 5' -55.8 NC_005808.1 + 9198 0.69 0.428484
Target:  5'- cGUUGGCCUGcucGGCGGCGcggCGCAc--- -3'
miRNA:   3'- cCGACUGGAC---CCGCCGUa--GCGUauug -5'
26642 5' -55.8 NC_005808.1 + 11850 0.69 0.418764
Target:  5'- cGGUUGGCCUGGGCGaaccccgcGCcaauAUCGCccAUGAg -3'
miRNA:   3'- -CCGACUGGACCCGC--------CG----UAGCG--UAUUg -5'
26642 5' -55.8 NC_005808.1 + 11600 0.69 0.414914
Target:  5'- cGGCUGGCCgccGGGCaGCAgugccagcggaaGCAUGAg -3'
miRNA:   3'- -CCGACUGGa--CCCGcCGUag----------CGUAUUg -5'
26642 5' -55.8 NC_005808.1 + 26269 0.69 0.409179
Target:  5'- cGCcGGCCUGGuCGGCucgCGCAUcGCg -3'
miRNA:   3'- cCGaCUGGACCcGCCGua-GCGUAuUG- -5'
26642 5' -55.8 NC_005808.1 + 13456 0.69 0.399733
Target:  5'- uGGC-GGCCUcgGGcGCGGUGUCggGCAUGACc -3'
miRNA:   3'- -CCGaCUGGA--CC-CGCCGUAG--CGUAUUG- -5'
26642 5' -55.8 NC_005808.1 + 333 0.74 0.217165
Target:  5'- aGGCUGGC---GGUGGCGUCGCGcAGCa -3'
miRNA:   3'- -CCGACUGgacCCGCCGUAGCGUaUUG- -5'
26642 5' -55.8 NC_005808.1 + 4662 1.11 0.000396
Target:  5'- uGGCUGACCUGGGCGGCAUCGCAUAACu -3'
miRNA:   3'- -CCGACUGGACCCGCCGUAGCGUAUUG- -5'
26642 5' -55.8 NC_005808.1 + 11643 0.79 0.098697
Target:  5'- cGGCgGcCCUGGGCGGCAUgGCuucgAUGACc -3'
miRNA:   3'- -CCGaCuGGACCCGCCGUAgCG----UAUUG- -5'
26642 5' -55.8 NC_005808.1 + 35612 0.75 0.18434
Target:  5'- aGGCgcaUGGCCUcGGGCGGCAgcgUCGUuugAACa -3'
miRNA:   3'- -CCG---ACUGGA-CCCGCCGU---AGCGua-UUG- -5'
26642 5' -55.8 NC_005808.1 + 32415 0.74 0.211365
Target:  5'- cGGCgaccgcagcGACCUGGGCGGCgGUUGUcggGACg -3'
miRNA:   3'- -CCGa--------CUGGACCCGCCG-UAGCGua-UUG- -5'
26642 5' -55.8 NC_005808.1 + 7312 0.73 0.241733
Target:  5'- ---aGACCUGGGCGGCcgacAUCGCcgAGg -3'
miRNA:   3'- ccgaCUGGACCCGCCG----UAGCGuaUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.