miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26642 5' -55.8 NC_005808.1 + 5593 0.71 0.297769
Target:  5'- gGGCgGaACCUGGGCGGCcggCGUGUccuACg -3'
miRNA:   3'- -CCGaC-UGGACCCGCCGua-GCGUAu--UG- -5'
26642 5' -55.8 NC_005808.1 + 7312 0.73 0.241733
Target:  5'- ---aGACCUGGGCGGCcgacAUCGCcgAGg -3'
miRNA:   3'- ccgaCUGGACCCGCCG----UAGCGuaUUg -5'
26642 5' -55.8 NC_005808.1 + 32415 0.74 0.211365
Target:  5'- cGGCgaccgcagcGACCUGGGCGGCgGUUGUcggGACg -3'
miRNA:   3'- -CCGa--------CUGGACCCGCCG-UAGCGua-UUG- -5'
26642 5' -55.8 NC_005808.1 + 35612 0.75 0.18434
Target:  5'- aGGCgcaUGGCCUcGGGCGGCAgcgUCGUuugAACa -3'
miRNA:   3'- -CCG---ACUGGA-CCCGCCGU---AGCGua-UUG- -5'
26642 5' -55.8 NC_005808.1 + 11643 0.79 0.098697
Target:  5'- cGGCgGcCCUGGGCGGCAUgGCuucgAUGACc -3'
miRNA:   3'- -CCGaCuGGACCCGCCGUAgCG----UAUUG- -5'
26642 5' -55.8 NC_005808.1 + 4662 1.11 0.000396
Target:  5'- uGGCUGACCUGGGCGGCAUCGCAUAACu -3'
miRNA:   3'- -CCGACUGGACCCGCCGUAGCGUAUUG- -5'
26642 5' -55.8 NC_005808.1 + 11559 0.66 0.609895
Target:  5'- cGCUGcCCUuuGCGGUGUCGCAggcGACc -3'
miRNA:   3'- cCGACuGGAccCGCCGUAGCGUa--UUG- -5'
26642 5' -55.8 NC_005808.1 + 874 0.67 0.554145
Target:  5'- cGGCaaGGgCUGGGCGcggcGCGUCGCcgGAa -3'
miRNA:   3'- -CCGa-CUgGACCCGC----CGUAGCGuaUUg -5'
26642 5' -55.8 NC_005808.1 + 32140 0.67 0.499996
Target:  5'- uGUUGGCg-GGGCcgaugagcauGGCGUCGCAUAGu -3'
miRNA:   3'- cCGACUGgaCCCG----------CCGUAGCGUAUUg -5'
26642 5' -55.8 NC_005808.1 + 19696 0.68 0.478987
Target:  5'- cGCUGGCCgaugucGCGGCc-CGCAUGACc -3'
miRNA:   3'- cCGACUGGacc---CGCCGuaGCGUAUUG- -5'
26642 5' -55.8 NC_005808.1 + 38571 0.7 0.372243
Target:  5'- aGGCcGGCCaggUGGGCGGCgcugaauucGUCGCGg--- -3'
miRNA:   3'- -CCGaCUGG---ACCCGCCG---------UAGCGUauug -5'
26642 5' -55.8 NC_005808.1 + 10269 0.67 0.554145
Target:  5'- cGCcGACCaucGGGcCGGCGUgCGCuUGACg -3'
miRNA:   3'- cCGaCUGGa--CCC-GCCGUA-GCGuAUUG- -5'
26642 5' -55.8 NC_005808.1 + 35961 0.7 0.381262
Target:  5'- aGGCacaccuUGuCCUGGGCGcGCAUCuGCuugAGCa -3'
miRNA:   3'- -CCG------ACuGGACCCGC-CGUAG-CGua-UUG- -5'
26642 5' -55.8 NC_005808.1 + 14891 0.68 0.489438
Target:  5'- cGGCaucGACCUGGGCgaaGGCAgcgcCGCcgAGg -3'
miRNA:   3'- -CCGa--CUGGACCCG---CCGUa---GCGuaUUg -5'
26642 5' -55.8 NC_005808.1 + 30186 0.66 0.598667
Target:  5'- cGGCgUGuuCUGGcGCGGCcucAUCGCcuggGACa -3'
miRNA:   3'- -CCG-ACugGACC-CGCCG---UAGCGua--UUG- -5'
26642 5' -55.8 NC_005808.1 + 34066 0.69 0.390426
Target:  5'- cGGC-GACCgugGGGaUGGCGUagGCGUGGCc -3'
miRNA:   3'- -CCGaCUGGa--CCC-GCCGUAg-CGUAUUG- -5'
26642 5' -55.8 NC_005808.1 + 8127 0.72 0.268574
Target:  5'- aGGCagcGACCUGGGCGcGCGUCauggacggcgGCAagGACg -3'
miRNA:   3'- -CCGa--CUGGACCCGC-CGUAG----------CGUa-UUG- -5'
26642 5' -55.8 NC_005808.1 + 12267 0.66 0.576311
Target:  5'- cGGUagUGuCCUGGGCGG-GUUGC-UGGCc -3'
miRNA:   3'- -CCG--ACuGGACCCGCCgUAGCGuAUUG- -5'
26642 5' -55.8 NC_005808.1 + 9312 0.67 0.554146
Target:  5'- cGGC-GACCU-GGCGGCGcacgucggCGCGgcgGGCg -3'
miRNA:   3'- -CCGaCUGGAcCCGCCGUa-------GCGUa--UUG- -5'
26642 5' -55.8 NC_005808.1 + 1998 0.67 0.543156
Target:  5'- uGGCUGAUCuUGaGGCccaGGCGcUCGC-UGGCg -3'
miRNA:   3'- -CCGACUGG-AC-CCG---CCGU-AGCGuAUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.