miRNA display CGI


Results 21 - 40 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26644 3' -47.7 NC_005808.1 + 25489 0.7 0.823905
Target:  5'- uGCAGCGCAuGACGgaaAUCAuggGCGGCa -3'
miRNA:   3'- -UGUUGCGU-CUGUug-UAGUua-CGCUGg -5'
26644 3' -47.7 NC_005808.1 + 7879 0.71 0.793371
Target:  5'- gGCAACGaGGGCAACAUCca-GCG-CCu -3'
miRNA:   3'- -UGUUGCgUCUGUUGUAGuuaCGCuGG- -5'
26644 3' -47.7 NC_005808.1 + 11569 0.73 0.66931
Target:  5'- cCAGCGCAGGCGcuGCccuuugcgguGUCGcagGCGACCa -3'
miRNA:   3'- uGUUGCGUCUGU--UG----------UAGUua-CGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 37223 0.77 0.472786
Target:  5'- gGCGGCGUGGGCGAgGUCGGUauCGACCa -3'
miRNA:   3'- -UGUUGCGUCUGUUgUAGUUAc-GCUGG- -5'
26644 3' -47.7 NC_005808.1 + 24539 0.69 0.889634
Target:  5'- -uGGCGCAGGcCAagcagcaggucgucgGCGUCAAUGUcGCCg -3'
miRNA:   3'- ugUUGCGUCU-GU---------------UGUAGUUACGcUGG- -5'
26644 3' -47.7 NC_005808.1 + 26220 0.7 0.861299
Target:  5'- cGCAuCGCAGACGGCGagcCGcUGCG-CCa -3'
miRNA:   3'- -UGUuGCGUCUGUUGUa--GUuACGCuGG- -5'
26644 3' -47.7 NC_005808.1 + 4411 0.72 0.761087
Target:  5'- gGCAACGCAacGGcCAGCAUCAAggcugGC-ACCa -3'
miRNA:   3'- -UGUUGCGU--CU-GUUGUAGUUa----CGcUGG- -5'
26644 3' -47.7 NC_005808.1 + 34094 0.79 0.361884
Target:  5'- gGCAGCGaCAGGCGcgACAcgacggUCAcgGCGACCg -3'
miRNA:   3'- -UGUUGC-GUCUGU--UGU------AGUuaCGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 34216 0.7 0.861299
Target:  5'- uCGGCGCGauGuCGGCGUCGAgGUGGCCu -3'
miRNA:   3'- uGUUGCGU--CuGUUGUAGUUaCGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 5130 0.83 0.228857
Target:  5'- gGCAAUGCcGACAACAUCAAUGCaGCg -3'
miRNA:   3'- -UGUUGCGuCUGUUGUAGUUACGcUGg -5'
26644 3' -47.7 NC_005808.1 + 15081 0.71 0.782786
Target:  5'- cCAACGCGGACAcCAUCGAgucuauugGCaacGCCa -3'
miRNA:   3'- uGUUGCGUCUGUuGUAGUUa-------CGc--UGG- -5'
26644 3' -47.7 NC_005808.1 + 14355 0.7 0.823905
Target:  5'- aACGACGUGGGCcGCAUCGccgacagcaugGUGCagcaGGCCa -3'
miRNA:   3'- -UGUUGCGUCUGuUGUAGU-----------UACG----CUGG- -5'
26644 3' -47.7 NC_005808.1 + 12485 0.72 0.727426
Target:  5'- gACAGCGCcaccaaGGACGGCAUCAA---GGCCg -3'
miRNA:   3'- -UGUUGCG------UCUGUUGUAGUUacgCUGG- -5'
26644 3' -47.7 NC_005808.1 + 5481 0.73 0.681068
Target:  5'- gGCAACGUGGACAcgguugcugaaaACAUCg--GCGACg -3'
miRNA:   3'- -UGUUGCGUCUGU------------UGUAGuuaCGCUGg -5'
26644 3' -47.7 NC_005808.1 + 5658 0.74 0.610167
Target:  5'- aACGAgGCGGACAucgACA-CGGUgGCGGCCa -3'
miRNA:   3'- -UGUUgCGUCUGU---UGUaGUUA-CGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 4685 0.76 0.540014
Target:  5'- gGCAGCGCGGGcCAACAUUGGccugGCuGACCu -3'
miRNA:   3'- -UGUUGCGUCU-GUUGUAGUUa---CG-CUGG- -5'
26644 3' -47.7 NC_005808.1 + 28774 0.69 0.894278
Target:  5'- cGCGuGCGCcGACAGCAUCGAccuUGUGAa- -3'
miRNA:   3'- -UGU-UGCGuCUGUUGUAGUU---ACGCUgg -5'
26644 3' -47.7 NC_005808.1 + 12704 0.69 0.894278
Target:  5'- cCGACGCcaaaGGACGGCAgcagCGAUGcCGAgCg -3'
miRNA:   3'- uGUUGCG----UCUGUUGUa---GUUAC-GCUgG- -5'
26644 3' -47.7 NC_005808.1 + 17224 0.69 0.88568
Target:  5'- -gGGCGCAucGACGACGUgaaguacCAAaGCGGCCu -3'
miRNA:   3'- ugUUGCGU--CUGUUGUA-------GUUaCGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 8047 0.7 0.861299
Target:  5'- -gAGCGCGG-CGACAUggaaaccaCGAUGCGcGCCg -3'
miRNA:   3'- ugUUGCGUCuGUUGUA--------GUUACGC-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.