Results 1 - 20 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26646 | 5' | -53.1 | NC_005808.1 | + | 5408 | 1.1 | 0.00112 |
Target: 5'- cUGUCGCCAACGACAUCGACAGCGUGGu -3' miRNA: 3'- -ACAGCGGUUGCUGUAGCUGUCGCACC- -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 19049 | 0.85 | 0.063549 |
Target: 5'- gGcCGCCGGCGGCGUCGAuCAGCGUGu -3' miRNA: 3'- aCaGCGGUUGCUGUAGCU-GUCGCACc -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 6060 | 0.8 | 0.135419 |
Target: 5'- cGUCGCCAuuuugaGCGACGcaGACGGUGUGGa -3' miRNA: 3'- aCAGCGGU------UGCUGUagCUGUCGCACC- -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 6297 | 0.8 | 0.13932 |
Target: 5'- gGUCGCCcACGACAUUGACGGCa--- -3' miRNA: 3'- aCAGCGGuUGCUGUAGCUGUCGcacc -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 35072 | 0.78 | 0.18434 |
Target: 5'- aGUCGUCGGCGACgGUgGACAGCacGUGGu -3' miRNA: 3'- aCAGCGGUUGCUG-UAgCUGUCG--CACC- -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 14900 | 0.78 | 0.194764 |
Target: 5'- gGcCGCCAACGGCAUCGACcugGGCGa-- -3' miRNA: 3'- aCaGCGGUUGCUGUAGCUG---UCGCacc -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 35017 | 0.77 | 0.217165 |
Target: 5'- cGUCGCCGACGACuUCGugGaCGUGu -3' miRNA: 3'- aCAGCGGUUGCUGuAGCugUcGCACc -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 12498 | 0.76 | 0.261646 |
Target: 5'- ---gGUCGGCGACAUCGACAGCGc-- -3' miRNA: 3'- acagCGGUUGCUGUAGCUGUCGCacc -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 1364 | 0.76 | 0.268574 |
Target: 5'- cGUCGCCcugGGCG-CGGCGGUGUGGg -3' miRNA: 3'- aCAGCGGuugCUGUaGCUGUCGCACC- -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 14981 | 0.76 | 0.27565 |
Target: 5'- gGUCGCCAgaAUGGCGUCGGCAuugGCGUu- -3' miRNA: 3'- aCAGCGGU--UGCUGUAGCUGU---CGCAcc -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 11440 | 0.75 | 0.282145 |
Target: 5'- gGUCGCCGauaaggcGCGACAcCGGCAGCuuuucaGUGGc -3' miRNA: 3'- aCAGCGGU-------UGCUGUaGCUGUCG------CACC- -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 8578 | 0.75 | 0.305442 |
Target: 5'- -uUCGCCGGCGACAUCaagGGCAucGaCGUGGa -3' miRNA: 3'- acAGCGGUUGCUGUAG---CUGU--C-GCACC- -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 5377 | 0.74 | 0.329366 |
Target: 5'- cGUgGCCGGCGACcuggaaaauAUCGACGcCGUGGc -3' miRNA: 3'- aCAgCGGUUGCUG---------UAGCUGUcGCACC- -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 16437 | 0.74 | 0.329367 |
Target: 5'- -aUCGCCGGCGGCGUUGAacaCGGCGUc- -3' miRNA: 3'- acAGCGGUUGCUGUAGCU---GUCGCAcc -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 19626 | 0.73 | 0.390426 |
Target: 5'- gGUCaugcggGCC-GCGACAUCGGcCAGCGUcGGg -3' miRNA: 3'- aCAG------CGGuUGCUGUAGCU-GUCGCA-CC- -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 23611 | 0.73 | 0.399732 |
Target: 5'- aUGUCgGCCGAgGcCAUCGACcGCGUGc -3' miRNA: 3'- -ACAG-CGGUUgCuGUAGCUGuCGCACc -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 5553 | 0.73 | 0.408229 |
Target: 5'- gGUCGCCcgccACGGUAUCGACGGCGccaacgcUGGc -3' miRNA: 3'- aCAGCGGu---UGCUGUAGCUGUCGC-------ACC- -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 3713 | 0.72 | 0.415874 |
Target: 5'- gGUUGCUuguggacgugggguAACGAguUCGGCGGCGUGa -3' miRNA: 3'- aCAGCGG--------------UUGCUguAGCUGUCGCACc -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 7444 | 0.72 | 0.418764 |
Target: 5'- cGggCGUCAACGACGUgauucaCGACcuGGCGUGGc -3' miRNA: 3'- aCa-GCGGUUGCUGUA------GCUG--UCGCACC- -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 23098 | 0.72 | 0.418764 |
Target: 5'- cGaCGCCAACGGCGgcgcccacggCGACAGCGg-- -3' miRNA: 3'- aCaGCGGUUGCUGUa---------GCUGUCGCacc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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