Results 1 - 20 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26646 | 5' | -53.1 | NC_005808.1 | + | 6297 | 0.8 | 0.13932 |
Target: 5'- gGUCGCCcACGACAUUGACGGCa--- -3' miRNA: 3'- aCAGCGGuUGCUGUAGCUGUCGcacc -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 9847 | 0.69 | 0.598668 |
Target: 5'- -cUCGgUuuCGGCGUCGAUgAGCGUGGc -3' miRNA: 3'- acAGCgGuuGCUGUAGCUG-UCGCACC- -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 28558 | 0.69 | 0.597546 |
Target: 5'- gGcCGCCGgccaucgcggcGCGcACGUCGgccaccgGCAGCGUGGu -3' miRNA: 3'- aCaGCGGU-----------UGC-UGUAGC-------UGUCGCACC- -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 28039 | 0.7 | 0.5652 |
Target: 5'- cGUCGCCGaagaacacgucgGCGACGgucugcUCGAaCAGCG-GGc -3' miRNA: 3'- aCAGCGGU------------UGCUGU------AGCU-GUCGCaCC- -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 40888 | 0.7 | 0.5652 |
Target: 5'- uUGUCGCCAcCGACA-CGAUGGaCGaauUGGu -3' miRNA: 3'- -ACAGCGGUuGCUGUaGCUGUC-GC---ACC- -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 37694 | 0.7 | 0.55856 |
Target: 5'- cGUCGCCGACcugucgaACAUCGAaggacgcaugauuGCGUGGc -3' miRNA: 3'- aCAGCGGUUGc------UGUAGCUgu-----------CGCACC- -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 12028 | 0.7 | 0.554146 |
Target: 5'- cGUgGCCGGCGAgGUCuugccCAGCGUGu -3' miRNA: 3'- aCAgCGGUUGCUgUAGcu---GUCGCACc -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 29962 | 0.7 | 0.543156 |
Target: 5'- uUGUCGUC-GCGGCGcaCGACGGCcUGGa -3' miRNA: 3'- -ACAGCGGuUGCUGUa-GCUGUCGcACC- -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 22072 | 0.7 | 0.531152 |
Target: 5'- gGUCGCgGucggcgcGCGGC-UCGAUGGCGUGa -3' miRNA: 3'- aCAGCGgU-------UGCUGuAGCUGUCGCACc -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 35350 | 0.7 | 0.521403 |
Target: 5'- ---gGCCGGCGACAUCGGCccgcGCcaGUGGc -3' miRNA: 3'- acagCGGUUGCUGUAGCUGu---CG--CACC- -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 33079 | 0.72 | 0.458421 |
Target: 5'- gGUCGCgCAGCGACG-CGGCGGCc--- -3' miRNA: 3'- aCAGCG-GUUGCUGUaGCUGUCGcacc -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 5351 | 0.72 | 0.448317 |
Target: 5'- aUGUCGUUGGCGACAgccaacaugcUCGACAgguGCGUGc -3' miRNA: 3'- -ACAGCGGUUGCUGU----------AGCUGU---CGCACc -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 23098 | 0.72 | 0.418764 |
Target: 5'- cGaCGCCAACGGCGgcgcccacggCGACAGCGg-- -3' miRNA: 3'- aCaGCGGUUGCUGUa---------GCUGUCGCacc -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 5553 | 0.73 | 0.408229 |
Target: 5'- gGUCGCCcgccACGGUAUCGACGGCGccaacgcUGGc -3' miRNA: 3'- aCAGCGGu---UGCUGUAGCUGUCGC-------ACC- -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 19626 | 0.73 | 0.390426 |
Target: 5'- gGUCaugcggGCC-GCGACAUCGGcCAGCGUcGGg -3' miRNA: 3'- aCAG------CGGuUGCUGUAGCU-GUCGCA-CC- -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 16437 | 0.74 | 0.329367 |
Target: 5'- -aUCGCCGGCGGCGUUGAacaCGGCGUc- -3' miRNA: 3'- acAGCGGUUGCUGUAGCU---GUCGCAcc -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 11440 | 0.75 | 0.282145 |
Target: 5'- gGUCGCCGauaaggcGCGACAcCGGCAGCuuuucaGUGGc -3' miRNA: 3'- aCAGCGGU-------UGCUGUaGCUGUCG------CACC- -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 14981 | 0.76 | 0.27565 |
Target: 5'- gGUCGCCAgaAUGGCGUCGGCAuugGCGUu- -3' miRNA: 3'- aCAGCGGU--UGCUGUAGCUGU---CGCAcc -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 35017 | 0.77 | 0.217165 |
Target: 5'- cGUCGCCGACGACuUCGugGaCGUGu -3' miRNA: 3'- aCAGCGGUUGCUGuAGCugUcGCACc -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 19049 | 0.85 | 0.063549 |
Target: 5'- gGcCGCCGGCGGCGUCGAuCAGCGUGu -3' miRNA: 3'- aCaGCGGUUGCUGUAGCU-GUCGCACc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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