miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26646 5' -53.1 NC_005808.1 + 5408 1.1 0.00112
Target:  5'- cUGUCGCCAACGACAUCGACAGCGUGGu -3'
miRNA:   3'- -ACAGCGGUUGCUGUAGCUGUCGCACC- -5'
26646 5' -53.1 NC_005808.1 + 2218 0.7 0.554145
Target:  5'- -uUCGCCAACGuguaCGGCGGCGcGGu -3'
miRNA:   3'- acAGCGGUUGCuguaGCUGUCGCaCC- -5'
26646 5' -53.1 NC_005808.1 + 23424 0.69 0.598667
Target:  5'- --aCGCCAcCGuguuCAUCGGCGGCGaGGc -3'
miRNA:   3'- acaGCGGUuGCu---GUAGCUGUCGCaCC- -5'
26646 5' -53.1 NC_005808.1 + 34462 0.66 0.794823
Target:  5'- -uUCGUCAGCGACAU-GGCGGCc--- -3'
miRNA:   3'- acAGCGGUUGCUGUAgCUGUCGcacc -5'
26646 5' -53.1 NC_005808.1 + 12498 0.76 0.261646
Target:  5'- ---gGUCGGCGACAUCGACAGCGc-- -3'
miRNA:   3'- acagCGGUUGCUGUAGCUGUCGCacc -5'
26646 5' -53.1 NC_005808.1 + 1364 0.76 0.268574
Target:  5'- cGUCGCCcugGGCG-CGGCGGUGUGGg -3'
miRNA:   3'- aCAGCGGuugCUGUaGCUGUCGCACC- -5'
26646 5' -53.1 NC_005808.1 + 5377 0.74 0.329366
Target:  5'- cGUgGCCGGCGACcuggaaaauAUCGACGcCGUGGc -3'
miRNA:   3'- aCAgCGGUUGCUG---------UAGCUGUcGCACC- -5'
26646 5' -53.1 NC_005808.1 + 23611 0.73 0.399732
Target:  5'- aUGUCgGCCGAgGcCAUCGACcGCGUGc -3'
miRNA:   3'- -ACAG-CGGUUgCuGUAGCUGuCGCACc -5'
26646 5' -53.1 NC_005808.1 + 23169 0.72 0.438336
Target:  5'- cUGUCGCCGugGGCGccgcCGuuGGCGUcGGg -3'
miRNA:   3'- -ACAGCGGUugCUGUa---GCugUCGCA-CC- -5'
26646 5' -53.1 NC_005808.1 + 28293 0.7 0.554145
Target:  5'- aGUCcgacCCGcGCGugGUCGuCGGCGUGGc -3'
miRNA:   3'- aCAGc---GGU-UGCugUAGCuGUCGCACC- -5'
26646 5' -53.1 NC_005808.1 + 6481 0.71 0.499996
Target:  5'- aGgCGCCAACGACAUgGGCcGCGa-- -3'
miRNA:   3'- aCaGCGGUUGCUGUAgCUGuCGCacc -5'
26646 5' -53.1 NC_005808.1 + 7444 0.72 0.418764
Target:  5'- cGggCGUCAACGACGUgauucaCGACcuGGCGUGGc -3'
miRNA:   3'- aCa-GCGGUUGCUGUA------GCUG--UCGCACC- -5'
26646 5' -53.1 NC_005808.1 + 6060 0.8 0.135419
Target:  5'- cGUCGCCAuuuugaGCGACGcaGACGGUGUGGa -3'
miRNA:   3'- aCAGCGGU------UGCUGUagCUGUCGCACC- -5'
26646 5' -53.1 NC_005808.1 + 7735 0.7 0.525727
Target:  5'- aUGcCGCCAaagaacggcgcguguACGGCAagGAgcCGGCGUGGg -3'
miRNA:   3'- -ACaGCGGU---------------UGCUGUagCU--GUCGCACC- -5'
26646 5' -53.1 NC_005808.1 + 35072 0.78 0.18434
Target:  5'- aGUCGUCGGCGACgGUgGACAGCacGUGGu -3'
miRNA:   3'- aCAGCGGUUGCUG-UAgCUGUCG--CACC- -5'
26646 5' -53.1 NC_005808.1 + 3713 0.72 0.415874
Target:  5'- gGUUGCUuguggacgugggguAACGAguUCGGCGGCGUGa -3'
miRNA:   3'- aCAGCGG--------------UUGCUguAGCUGUCGCACc -5'
26646 5' -53.1 NC_005808.1 + 35153 0.7 0.547543
Target:  5'- gGUUGCCGaggAUGGCGuugucuaccgugcgcUCGGCGGCGUGc -3'
miRNA:   3'- aCAGCGGU---UGCUGU---------------AGCUGUCGCACc -5'
26646 5' -53.1 NC_005808.1 + 19242 0.7 0.57631
Target:  5'- cGaCGCCGGCGGCAcgGGCAGCGa-- -3'
miRNA:   3'- aCaGCGGUUGCUGUagCUGUCGCacc -5'
26646 5' -53.1 NC_005808.1 + 14900 0.78 0.194764
Target:  5'- gGcCGCCAACGGCAUCGACcugGGCGa-- -3'
miRNA:   3'- aCaGCGGUUGCUGUAGCUG---UCGCacc -5'
26646 5' -53.1 NC_005808.1 + 8578 0.75 0.305442
Target:  5'- -uUCGCCGGCGACAUCaagGGCAucGaCGUGGa -3'
miRNA:   3'- acAGCGGUUGCUGUAG---CUGU--C-GCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.