miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26646 5' -53.1 NC_005808.1 + 1364 0.76 0.268574
Target:  5'- cGUCGCCcugGGCG-CGGCGGUGUGGg -3'
miRNA:   3'- aCAGCGGuugCUGUaGCUGUCGCACC- -5'
26646 5' -53.1 NC_005808.1 + 1934 0.67 0.721523
Target:  5'- gGUCGCCAAUuuCAUCaagcACGGCGaGGa -3'
miRNA:   3'- aCAGCGGUUGcuGUAGc---UGUCGCaCC- -5'
26646 5' -53.1 NC_005808.1 + 2088 0.66 0.764235
Target:  5'- -aUCGCCugcGCGACuUCGcCAGCGagcgccUGGg -3'
miRNA:   3'- acAGCGGu--UGCUGuAGCuGUCGC------ACC- -5'
26646 5' -53.1 NC_005808.1 + 2218 0.7 0.554145
Target:  5'- -uUCGCCAACGuguaCGGCGGCGcGGu -3'
miRNA:   3'- acAGCGGUUGCuguaGCUGUCGCaCC- -5'
26646 5' -53.1 NC_005808.1 + 3475 0.66 0.774589
Target:  5'- aUGuUCGCgGGCGAguUCGACGGCc--- -3'
miRNA:   3'- -AC-AGCGgUUGCUguAGCUGUCGcacc -5'
26646 5' -53.1 NC_005808.1 + 3713 0.72 0.415874
Target:  5'- gGUUGCUuguggacgugggguAACGAguUCGGCGGCGUGa -3'
miRNA:   3'- aCAGCGG--------------UUGCUguAGCUGUCGCACc -5'
26646 5' -53.1 NC_005808.1 + 4855 0.67 0.69956
Target:  5'- aG-CGCCAGcCGGCGUgcUGggcGCAGUGUGGg -3'
miRNA:   3'- aCaGCGGUU-GCUGUA--GC---UGUCGCACC- -5'
26646 5' -53.1 NC_005808.1 + 4876 0.67 0.743115
Target:  5'- cGUUGcCCAGCG-CggCGACGGCGg-- -3'
miRNA:   3'- aCAGC-GGUUGCuGuaGCUGUCGCacc -5'
26646 5' -53.1 NC_005808.1 + 5351 0.72 0.448317
Target:  5'- aUGUCGUUGGCGACAgccaacaugcUCGACAgguGCGUGc -3'
miRNA:   3'- -ACAGCGGUUGCUGU----------AGCUGU---CGCACc -5'
26646 5' -53.1 NC_005808.1 + 5377 0.74 0.329366
Target:  5'- cGUgGCCGGCGACcuggaaaauAUCGACGcCGUGGc -3'
miRNA:   3'- aCAgCGGUUGCUG---------UAGCUGUcGCACC- -5'
26646 5' -53.1 NC_005808.1 + 5408 1.1 0.00112
Target:  5'- cUGUCGCCAACGACAUCGACAGCGUGGu -3'
miRNA:   3'- -ACAGCGGUUGCUGUAGCUGUCGCACC- -5'
26646 5' -53.1 NC_005808.1 + 5498 0.67 0.743114
Target:  5'- uUGUCGCaAACagUAUCGGCAaCGUGGa -3'
miRNA:   3'- -ACAGCGgUUGcuGUAGCUGUcGCACC- -5'
26646 5' -53.1 NC_005808.1 + 5553 0.73 0.408229
Target:  5'- gGUCGCCcgccACGGUAUCGACGGCGccaacgcUGGc -3'
miRNA:   3'- aCAGCGGu---UGCUGUAGCUGUCGC-------ACC- -5'
26646 5' -53.1 NC_005808.1 + 5617 0.67 0.75374
Target:  5'- gGUaGCC-ACGGCGUCGAUguuGGCGaGGu -3'
miRNA:   3'- aCAgCGGuUGCUGUAGCUG---UCGCaCC- -5'
26646 5' -53.1 NC_005808.1 + 5685 0.68 0.654907
Target:  5'- -cUCGCCA---ACAUCGACGcCGUGGc -3'
miRNA:   3'- acAGCGGUugcUGUAGCUGUcGCACC- -5'
26646 5' -53.1 NC_005808.1 + 5896 0.68 0.666132
Target:  5'- gGUCGCCAGCGugGU-GAguGUGccgccgGGa -3'
miRNA:   3'- aCAGCGGUUGCugUAgCUguCGCa-----CC- -5'
26646 5' -53.1 NC_005808.1 + 6060 0.8 0.135419
Target:  5'- cGUCGCCAuuuugaGCGACGcaGACGGUGUGGa -3'
miRNA:   3'- aCAGCGGU------UGCUGUagCUGUCGCACC- -5'
26646 5' -53.1 NC_005808.1 + 6297 0.8 0.13932
Target:  5'- gGUCGCCcACGACAUUGACGGCa--- -3'
miRNA:   3'- aCAGCGGuUGCUGUAGCUGUCGcacc -5'
26646 5' -53.1 NC_005808.1 + 6481 0.71 0.499996
Target:  5'- aGgCGCCAACGACAUgGGCcGCGa-- -3'
miRNA:   3'- aCaGCGGUUGCUGUAgCUGuCGCacc -5'
26646 5' -53.1 NC_005808.1 + 6894 0.66 0.784789
Target:  5'- cGUCGCCGAgGGCAaCGACGaaacccgcGcCGUGu -3'
miRNA:   3'- aCAGCGGUUgCUGUaGCUGU--------C-GCACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.