Results 1 - 20 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26646 | 5' | -53.1 | NC_005808.1 | + | 1364 | 0.76 | 0.268574 |
Target: 5'- cGUCGCCcugGGCG-CGGCGGUGUGGg -3' miRNA: 3'- aCAGCGGuugCUGUaGCUGUCGCACC- -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 1934 | 0.67 | 0.721523 |
Target: 5'- gGUCGCCAAUuuCAUCaagcACGGCGaGGa -3' miRNA: 3'- aCAGCGGUUGcuGUAGc---UGUCGCaCC- -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 2088 | 0.66 | 0.764235 |
Target: 5'- -aUCGCCugcGCGACuUCGcCAGCGagcgccUGGg -3' miRNA: 3'- acAGCGGu--UGCUGuAGCuGUCGC------ACC- -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 2218 | 0.7 | 0.554145 |
Target: 5'- -uUCGCCAACGuguaCGGCGGCGcGGu -3' miRNA: 3'- acAGCGGUUGCuguaGCUGUCGCaCC- -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 3475 | 0.66 | 0.774589 |
Target: 5'- aUGuUCGCgGGCGAguUCGACGGCc--- -3' miRNA: 3'- -AC-AGCGgUUGCUguAGCUGUCGcacc -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 3713 | 0.72 | 0.415874 |
Target: 5'- gGUUGCUuguggacgugggguAACGAguUCGGCGGCGUGa -3' miRNA: 3'- aCAGCGG--------------UUGCUguAGCUGUCGCACc -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 4855 | 0.67 | 0.69956 |
Target: 5'- aG-CGCCAGcCGGCGUgcUGggcGCAGUGUGGg -3' miRNA: 3'- aCaGCGGUU-GCUGUA--GC---UGUCGCACC- -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 4876 | 0.67 | 0.743115 |
Target: 5'- cGUUGcCCAGCG-CggCGACGGCGg-- -3' miRNA: 3'- aCAGC-GGUUGCuGuaGCUGUCGCacc -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 5351 | 0.72 | 0.448317 |
Target: 5'- aUGUCGUUGGCGACAgccaacaugcUCGACAgguGCGUGc -3' miRNA: 3'- -ACAGCGGUUGCUGU----------AGCUGU---CGCACc -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 5377 | 0.74 | 0.329366 |
Target: 5'- cGUgGCCGGCGACcuggaaaauAUCGACGcCGUGGc -3' miRNA: 3'- aCAgCGGUUGCUG---------UAGCUGUcGCACC- -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 5408 | 1.1 | 0.00112 |
Target: 5'- cUGUCGCCAACGACAUCGACAGCGUGGu -3' miRNA: 3'- -ACAGCGGUUGCUGUAGCUGUCGCACC- -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 5498 | 0.67 | 0.743114 |
Target: 5'- uUGUCGCaAACagUAUCGGCAaCGUGGa -3' miRNA: 3'- -ACAGCGgUUGcuGUAGCUGUcGCACC- -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 5553 | 0.73 | 0.408229 |
Target: 5'- gGUCGCCcgccACGGUAUCGACGGCGccaacgcUGGc -3' miRNA: 3'- aCAGCGGu---UGCUGUAGCUGUCGC-------ACC- -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 5617 | 0.67 | 0.75374 |
Target: 5'- gGUaGCC-ACGGCGUCGAUguuGGCGaGGu -3' miRNA: 3'- aCAgCGGuUGCUGUAGCUG---UCGCaCC- -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 5685 | 0.68 | 0.654907 |
Target: 5'- -cUCGCCA---ACAUCGACGcCGUGGc -3' miRNA: 3'- acAGCGGUugcUGUAGCUGUcGCACC- -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 5896 | 0.68 | 0.666132 |
Target: 5'- gGUCGCCAGCGugGU-GAguGUGccgccgGGa -3' miRNA: 3'- aCAGCGGUUGCugUAgCUguCGCa-----CC- -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 6060 | 0.8 | 0.135419 |
Target: 5'- cGUCGCCAuuuugaGCGACGcaGACGGUGUGGa -3' miRNA: 3'- aCAGCGGU------UGCUGUagCUGUCGCACC- -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 6297 | 0.8 | 0.13932 |
Target: 5'- gGUCGCCcACGACAUUGACGGCa--- -3' miRNA: 3'- aCAGCGGuUGCUGUAGCUGUCGcacc -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 6481 | 0.71 | 0.499996 |
Target: 5'- aGgCGCCAACGACAUgGGCcGCGa-- -3' miRNA: 3'- aCaGCGGUUGCUGUAgCUGuCGCacc -5' |
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26646 | 5' | -53.1 | NC_005808.1 | + | 6894 | 0.66 | 0.784789 |
Target: 5'- cGUCGCCGAgGGCAaCGACGaaacccgcGcCGUGu -3' miRNA: 3'- aCAGCGGUUgCUGUaGCUGU--------C-GCACc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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