miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26646 5' -53.1 NC_005808.1 + 40888 0.7 0.5652
Target:  5'- uUGUCGCCAcCGACA-CGAUGGaCGaauUGGu -3'
miRNA:   3'- -ACAGCGGUuGCUGUaGCUGUC-GC---ACC- -5'
26646 5' -53.1 NC_005808.1 + 38915 0.69 0.621144
Target:  5'- cGUCGCCggGugGAUucgcaCGAaGGCGUGGa -3'
miRNA:   3'- aCAGCGG--UugCUGua---GCUgUCGCACC- -5'
26646 5' -53.1 NC_005808.1 + 37694 0.7 0.55856
Target:  5'- cGUCGCCGACcugucgaACAUCGAaggacgcaugauuGCGUGGc -3'
miRNA:   3'- aCAGCGGUUGc------UGUAGCUgu-----------CGCACC- -5'
26646 5' -53.1 NC_005808.1 + 37329 0.69 0.621143
Target:  5'- cGUgGCgCAGCauGGCAUCGcGCuGCGUGGc -3'
miRNA:   3'- aCAgCG-GUUG--CUGUAGC-UGuCGCACC- -5'
26646 5' -53.1 NC_005808.1 + 37244 0.68 0.654907
Target:  5'- cGUaCGCUccACGGCGcggaUGGCGGCGUGGg -3'
miRNA:   3'- aCA-GCGGu-UGCUGUa---GCUGUCGCACC- -5'
26646 5' -53.1 NC_005808.1 + 36860 0.66 0.784789
Target:  5'- cGgcagCGCCAGCGGauaGUCGGgcaUGGCGUGc -3'
miRNA:   3'- aCa---GCGGUUGCUg--UAGCU---GUCGCACc -5'
26646 5' -53.1 NC_005808.1 + 36520 0.66 0.784789
Target:  5'- cG-CGCuCGACGACuUCGagGCGGUGUGa -3'
miRNA:   3'- aCaGCG-GUUGCUGuAGC--UGUCGCACc -5'
26646 5' -53.1 NC_005808.1 + 35403 0.68 0.64366
Target:  5'- aUGUCGCCGGCcuuguGCAgcuucUCGGCGGUGgucGGa -3'
miRNA:   3'- -ACAGCGGUUGc----UGU-----AGCUGUCGCa--CC- -5'
26646 5' -53.1 NC_005808.1 + 35350 0.7 0.521403
Target:  5'- ---gGCCGGCGACAUCGGCccgcGCcaGUGGc -3'
miRNA:   3'- acagCGGUUGCUGUAGCUGu---CG--CACC- -5'
26646 5' -53.1 NC_005808.1 + 35153 0.7 0.547543
Target:  5'- gGUUGCCGaggAUGGCGuugucuaccgugcgcUCGGCGGCGUGc -3'
miRNA:   3'- aCAGCGGU---UGCUGU---------------AGCUGUCGCACc -5'
26646 5' -53.1 NC_005808.1 + 35072 0.78 0.18434
Target:  5'- aGUCGUCGGCGACgGUgGACAGCacGUGGu -3'
miRNA:   3'- aCAGCGGUUGCUG-UAgCUGUCG--CACC- -5'
26646 5' -53.1 NC_005808.1 + 35017 0.77 0.217165
Target:  5'- cGUCGCCGACGACuUCGugGaCGUGu -3'
miRNA:   3'- aCAGCGGUUGCUGuAGCugUcGCACc -5'
26646 5' -53.1 NC_005808.1 + 34859 0.69 0.632402
Target:  5'- cGUCGCCAACaGCAagcCGGCcgccgAGCGUGc -3'
miRNA:   3'- aCAGCGGUUGcUGUa--GCUG-----UCGCACc -5'
26646 5' -53.1 NC_005808.1 + 34594 0.66 0.764235
Target:  5'- cUGgCGCCAAgGGCAcgucCGACGcCGUGGu -3'
miRNA:   3'- -ACaGCGGUUgCUGUa---GCUGUcGCACC- -5'
26646 5' -53.1 NC_005808.1 + 34462 0.66 0.794823
Target:  5'- -uUCGUCAGCGACAU-GGCGGCc--- -3'
miRNA:   3'- acAGCGGUUGCUGUAgCUGUCGcacc -5'
26646 5' -53.1 NC_005808.1 + 34304 0.66 0.764235
Target:  5'- --cCGCUGGCuGCAcugcccCGGCAGCGUGGc -3'
miRNA:   3'- acaGCGGUUGcUGUa-----GCUGUCGCACC- -5'
26646 5' -53.1 NC_005808.1 + 33644 0.67 0.732371
Target:  5'- -uUCGCCAGCGguggccguGCcgCGAUAGCcagcgGUGGc -3'
miRNA:   3'- acAGCGGUUGC--------UGuaGCUGUCG-----CACC- -5'
26646 5' -53.1 NC_005808.1 + 33596 0.67 0.732371
Target:  5'- -uUCGCCAGCGguggccguGCcgCGAUAGCcagcgGUGGc -3'
miRNA:   3'- acAGCGGUUGC--------UGuaGCUGUCG-----CACC- -5'
26646 5' -53.1 NC_005808.1 + 33079 0.72 0.458421
Target:  5'- gGUCGCgCAGCGACG-CGGCGGCc--- -3'
miRNA:   3'- aCAGCG-GUUGCUGUaGCUGUCGcacc -5'
26646 5' -53.1 NC_005808.1 + 32495 0.68 0.677323
Target:  5'- aGUCGCUGcCGuCGUCuuGGCAGaCGUGGc -3'
miRNA:   3'- aCAGCGGUuGCuGUAG--CUGUC-GCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.