miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26646 5' -53.1 NC_005808.1 + 7444 0.72 0.418764
Target:  5'- cGggCGUCAACGACGUgauucaCGACcuGGCGUGGc -3'
miRNA:   3'- aCa-GCGGUUGCUGUA------GCUG--UCGCACC- -5'
26646 5' -53.1 NC_005808.1 + 7735 0.7 0.525727
Target:  5'- aUGcCGCCAaagaacggcgcguguACGGCAagGAgcCGGCGUGGg -3'
miRNA:   3'- -ACaGCGGU---------------UGCUGUagCU--GUCGCACC- -5'
26646 5' -53.1 NC_005808.1 + 8578 0.75 0.305442
Target:  5'- -uUCGCCGGCGACAUCaagGGCAucGaCGUGGa -3'
miRNA:   3'- acAGCGGUUGCUGUAG---CUGU--C-GCACC- -5'
26646 5' -53.1 NC_005808.1 + 8647 0.66 0.794823
Target:  5'- gGUCGCCGgccuucaucGCGcgGUCGGCAuuGCGUGc -3'
miRNA:   3'- aCAGCGGU---------UGCugUAGCUGU--CGCACc -5'
26646 5' -53.1 NC_005808.1 + 8904 0.66 0.773561
Target:  5'- aUGgCGCUAucgGCGGCGcgcUCGAUggcuucgGGCGUGGa -3'
miRNA:   3'- -ACaGCGGU---UGCUGU---AGCUG-------UCGCACC- -5'
26646 5' -53.1 NC_005808.1 + 9185 0.68 0.677324
Target:  5'- uUGgCGCCGuCGACGuuggccugcUCGGCGGCGcGGc -3'
miRNA:   3'- -ACaGCGGUuGCUGU---------AGCUGUCGCaCC- -5'
26646 5' -53.1 NC_005808.1 + 9847 0.69 0.598668
Target:  5'- -cUCGgUuuCGGCGUCGAUgAGCGUGGc -3'
miRNA:   3'- acAGCgGuuGCUGUAGCUG-UCGCACC- -5'
26646 5' -53.1 NC_005808.1 + 11440 0.75 0.282145
Target:  5'- gGUCGCCGauaaggcGCGACAcCGGCAGCuuuucaGUGGc -3'
miRNA:   3'- aCAGCGGU-------UGCUGUaGCUGUCG------CACC- -5'
26646 5' -53.1 NC_005808.1 + 11489 0.68 0.653783
Target:  5'- gGUCGCCuGCGACAcCGcaaaggGCAGCGccugcgcUGGc -3'
miRNA:   3'- aCAGCGGuUGCUGUaGC------UGUCGC-------ACC- -5'
26646 5' -53.1 NC_005808.1 + 12028 0.7 0.554146
Target:  5'- cGUgGCCGGCGAgGUCuugccCAGCGUGu -3'
miRNA:   3'- aCAgCGGUUGCUgUAGcu---GUCGCACc -5'
26646 5' -53.1 NC_005808.1 + 12115 0.67 0.732371
Target:  5'- cGgCGCCAuCGACuUCGACAcGC-UGGg -3'
miRNA:   3'- aCaGCGGUuGCUGuAGCUGU-CGcACC- -5'
26646 5' -53.1 NC_005808.1 + 12498 0.76 0.261646
Target:  5'- ---gGUCGGCGACAUCGACAGCGc-- -3'
miRNA:   3'- acagCGGUUGCUGUAGCUGUCGCacc -5'
26646 5' -53.1 NC_005808.1 + 13616 0.66 0.794823
Target:  5'- -cUUGCCGACaGCAUCGGUAGCGg-- -3'
miRNA:   3'- acAGCGGUUGcUGUAGCUGUCGCacc -5'
26646 5' -53.1 NC_005808.1 + 13748 0.67 0.743114
Target:  5'- --aCGCCGACGACAUCcucACGGUGc-- -3'
miRNA:   3'- acaGCGGUUGCUGUAGc--UGUCGCacc -5'
26646 5' -53.1 NC_005808.1 + 13932 0.67 0.699561
Target:  5'- aUGUCGCgCAGCGcCGUgGACuggaugcccucGGaCGUGGa -3'
miRNA:   3'- -ACAGCG-GUUGCuGUAgCUG-----------UC-GCACC- -5'
26646 5' -53.1 NC_005808.1 + 14900 0.78 0.194764
Target:  5'- gGcCGCCAACGGCAUCGACcugGGCGa-- -3'
miRNA:   3'- aCaGCGGUUGCUGUAGCUG---UCGCacc -5'
26646 5' -53.1 NC_005808.1 + 14981 0.76 0.27565
Target:  5'- gGUCGCCAgaAUGGCGUCGGCAuugGCGUu- -3'
miRNA:   3'- aCAGCGGU--UGCUGUAGCUGU---CGCAcc -5'
26646 5' -53.1 NC_005808.1 + 15348 0.71 0.478987
Target:  5'- cUGUCGCCGaaAUGGgG-CGACAGCG-GGc -3'
miRNA:   3'- -ACAGCGGU--UGCUgUaGCUGUCGCaCC- -5'
26646 5' -53.1 NC_005808.1 + 15631 0.67 0.69956
Target:  5'- cGUCGUCAcugacgGCGcCAUUGACcuGGaCGUGGa -3'
miRNA:   3'- aCAGCGGU------UGCuGUAGCUG--UC-GCACC- -5'
26646 5' -53.1 NC_005808.1 + 16437 0.74 0.329367
Target:  5'- -aUCGCCGGCGGCGUUGAacaCGGCGUc- -3'
miRNA:   3'- acAGCGGUUGCUGUAGCU---GUCGCAcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.