miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26646 5' -53.1 NC_005808.1 + 17355 0.67 0.710582
Target:  5'- aUGcgCGCCcGCGGCGcCGGCuuCGUGGa -3'
miRNA:   3'- -ACa-GCGGuUGCUGUaGCUGucGCACC- -5'
26646 5' -53.1 NC_005808.1 + 18467 0.67 0.732371
Target:  5'- cGgCGCCGGCGGCGUCGGCcGauucguccacCGUGa -3'
miRNA:   3'- aCaGCGGUUGCUGUAGCUGuC----------GCACc -5'
26646 5' -53.1 NC_005808.1 + 18763 0.67 0.742045
Target:  5'- -uUUGCCGGCGAuuucuucCAUCGuCAGCGUcgaGGc -3'
miRNA:   3'- acAGCGGUUGCU-------GUAGCuGUCGCA---CC- -5'
26646 5' -53.1 NC_005808.1 + 19049 0.85 0.063549
Target:  5'- gGcCGCCGGCGGCGUCGAuCAGCGUGu -3'
miRNA:   3'- aCaGCGGUUGCUGUAGCU-GUCGCACc -5'
26646 5' -53.1 NC_005808.1 + 19242 0.7 0.57631
Target:  5'- cGaCGCCGGCGGCAcgGGCAGCGa-- -3'
miRNA:   3'- aCaGCGGUUGCUGUagCUGUCGCacc -5'
26646 5' -53.1 NC_005808.1 + 19626 0.73 0.390426
Target:  5'- gGUCaugcggGCC-GCGACAUCGGcCAGCGUcGGg -3'
miRNA:   3'- aCAG------CGGuUGCUGUAGCU-GUCGCA-CC- -5'
26646 5' -53.1 NC_005808.1 + 19928 0.66 0.794823
Target:  5'- uUGUCGCCGcCGAacuccuuGUCGGC--CGUGGa -3'
miRNA:   3'- -ACAGCGGUuGCUg------UAGCUGucGCACC- -5'
26646 5' -53.1 NC_005808.1 + 20609 0.69 0.632402
Target:  5'- -uUCGCCAgGCGGCGUCGcagguCGGUGUcGGc -3'
miRNA:   3'- acAGCGGU-UGCUGUAGCu----GUCGCA-CC- -5'
26646 5' -53.1 NC_005808.1 + 22072 0.7 0.531152
Target:  5'- gGUCGCgGucggcgcGCGGC-UCGAUGGCGUGa -3'
miRNA:   3'- aCAGCGgU-------UGCUGuAGCUGUCGCACc -5'
26646 5' -53.1 NC_005808.1 + 22422 0.68 0.654907
Target:  5'- -uUCGCCAGCcACGccUUGACGGCGgcGGa -3'
miRNA:   3'- acAGCGGUUGcUGU--AGCUGUCGCa-CC- -5'
26646 5' -53.1 NC_005808.1 + 22901 0.67 0.75374
Target:  5'- cG-CGCUGuCGGCuGUCGGCAGCGcGGc -3'
miRNA:   3'- aCaGCGGUuGCUG-UAGCUGUCGCaCC- -5'
26646 5' -53.1 NC_005808.1 + 23098 0.72 0.418764
Target:  5'- cGaCGCCAACGGCGgcgcccacggCGACAGCGg-- -3'
miRNA:   3'- aCaGCGGUUGCUGUa---------GCUGUCGCacc -5'
26646 5' -53.1 NC_005808.1 + 23169 0.72 0.438336
Target:  5'- cUGUCGCCGugGGCGccgcCGuuGGCGUcGGg -3'
miRNA:   3'- -ACAGCGGUugCUGUa---GCugUCGCA-CC- -5'
26646 5' -53.1 NC_005808.1 + 23424 0.69 0.598667
Target:  5'- --aCGCCAcCGuguuCAUCGGCGGCGaGGc -3'
miRNA:   3'- acaGCGGUuGCu---GUAGCUGUCGCaCC- -5'
26646 5' -53.1 NC_005808.1 + 23611 0.73 0.399732
Target:  5'- aUGUCgGCCGAgGcCAUCGACcGCGUGc -3'
miRNA:   3'- -ACAG-CGGUUgCuGUAGCUGuCGCACc -5'
26646 5' -53.1 NC_005808.1 + 24552 0.67 0.699561
Target:  5'- gGUCGCgCAGCG-CggCGAUGGCGaGGc -3'
miRNA:   3'- aCAGCG-GUUGCuGuaGCUGUCGCaCC- -5'
26646 5' -53.1 NC_005808.1 + 27236 0.68 0.666132
Target:  5'- gGUCGUCGA-GGCAUCcGCGugcggcGCGUGGg -3'
miRNA:   3'- aCAGCGGUUgCUGUAGcUGU------CGCACC- -5'
26646 5' -53.1 NC_005808.1 + 28039 0.7 0.5652
Target:  5'- cGUCGCCGaagaacacgucgGCGACGgucugcUCGAaCAGCG-GGc -3'
miRNA:   3'- aCAGCGGU------------UGCUGU------AGCU-GUCGCaCC- -5'
26646 5' -53.1 NC_005808.1 + 28293 0.7 0.554145
Target:  5'- aGUCcgacCCGcGCGugGUCGuCGGCGUGGc -3'
miRNA:   3'- aCAGc---GGU-UGCugUAGCuGUCGCACC- -5'
26646 5' -53.1 NC_005808.1 + 28558 0.69 0.597546
Target:  5'- gGcCGCCGgccaucgcggcGCGcACGUCGgccaccgGCAGCGUGGu -3'
miRNA:   3'- aCaGCGGU-----------UGC-UGUAGC-------UGUCGCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.