Results 41 - 60 of 85 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26646 | 5' | -53.1 | NC_005808.1 | + | 28668 | 0.69 | 0.609896 |
Target: 5'- --gUGCCGGCGGCcUCGcCAGCGcGGc -3' miRNA: 3'- acaGCGGUUGCUGuAGCuGUCGCaCC- -5' |
|||||||
26646 | 5' | -53.1 | NC_005808.1 | + | 37329 | 0.69 | 0.621143 |
Target: 5'- cGUgGCgCAGCauGGCAUCGcGCuGCGUGGc -3' miRNA: 3'- aCAgCG-GUUG--CUGUAGC-UGuCGCACC- -5' |
|||||||
26646 | 5' | -53.1 | NC_005808.1 | + | 38915 | 0.69 | 0.621144 |
Target: 5'- cGUCGCCggGugGAUucgcaCGAaGGCGUGGa -3' miRNA: 3'- aCAGCGG--UugCUGua---GCUgUCGCACC- -5' |
|||||||
26646 | 5' | -53.1 | NC_005808.1 | + | 34859 | 0.69 | 0.632402 |
Target: 5'- cGUCGCCAACaGCAagcCGGCcgccgAGCGUGc -3' miRNA: 3'- aCAGCGGUUGcUGUa--GCUG-----UCGCACc -5' |
|||||||
26646 | 5' | -53.1 | NC_005808.1 | + | 20609 | 0.69 | 0.632402 |
Target: 5'- -uUCGCCAgGCGGCGUCGcagguCGGUGUcGGc -3' miRNA: 3'- acAGCGGU-UGCUGUAGCu----GUCGCA-CC- -5' |
|||||||
26646 | 5' | -53.1 | NC_005808.1 | + | 35403 | 0.68 | 0.64366 |
Target: 5'- aUGUCGCCGGCcuuguGCAgcuucUCGGCGGUGgucGGa -3' miRNA: 3'- -ACAGCGGUUGc----UGU-----AGCUGUCGCa--CC- -5' |
|||||||
26646 | 5' | -53.1 | NC_005808.1 | + | 11489 | 0.68 | 0.653783 |
Target: 5'- gGUCGCCuGCGACAcCGcaaaggGCAGCGccugcgcUGGc -3' miRNA: 3'- aCAGCGGuUGCUGUaGC------UGUCGC-------ACC- -5' |
|||||||
26646 | 5' | -53.1 | NC_005808.1 | + | 28772 | 0.68 | 0.654907 |
Target: 5'- cGUgCGCCGACaGCAUCGACcuUGUGa -3' miRNA: 3'- aCA-GCGGUUGcUGUAGCUGucGCACc -5' |
|||||||
26646 | 5' | -53.1 | NC_005808.1 | + | 37244 | 0.68 | 0.654907 |
Target: 5'- cGUaCGCUccACGGCGcggaUGGCGGCGUGGg -3' miRNA: 3'- aCA-GCGGu-UGCUGUa---GCUGUCGCACC- -5' |
|||||||
26646 | 5' | -53.1 | NC_005808.1 | + | 5685 | 0.68 | 0.654907 |
Target: 5'- -cUCGCCA---ACAUCGACGcCGUGGc -3' miRNA: 3'- acAGCGGUugcUGUAGCUGUcGCACC- -5' |
|||||||
26646 | 5' | -53.1 | NC_005808.1 | + | 22422 | 0.68 | 0.654907 |
Target: 5'- -uUCGCCAGCcACGccUUGACGGCGgcGGa -3' miRNA: 3'- acAGCGGUUGcUGU--AGCUGUCGCa-CC- -5' |
|||||||
26646 | 5' | -53.1 | NC_005808.1 | + | 27236 | 0.68 | 0.666132 |
Target: 5'- gGUCGUCGA-GGCAUCcGCGugcggcGCGUGGg -3' miRNA: 3'- aCAGCGGUUgCUGUAGcUGU------CGCACC- -5' |
|||||||
26646 | 5' | -53.1 | NC_005808.1 | + | 5896 | 0.68 | 0.666132 |
Target: 5'- gGUCGCCAGCGugGU-GAguGUGccgccgGGa -3' miRNA: 3'- aCAGCGGUUGCugUAgCUguCGCa-----CC- -5' |
|||||||
26646 | 5' | -53.1 | NC_005808.1 | + | 32495 | 0.68 | 0.677323 |
Target: 5'- aGUCGCUGcCGuCGUCuuGGCAGaCGUGGc -3' miRNA: 3'- aCAGCGGUuGCuGUAG--CUGUC-GCACC- -5' |
|||||||
26646 | 5' | -53.1 | NC_005808.1 | + | 9185 | 0.68 | 0.677324 |
Target: 5'- uUGgCGCCGuCGACGuuggccugcUCGGCGGCGcGGc -3' miRNA: 3'- -ACaGCGGUuGCUGU---------AGCUGUCGCaCC- -5' |
|||||||
26646 | 5' | -53.1 | NC_005808.1 | + | 15631 | 0.67 | 0.69956 |
Target: 5'- cGUCGUCAcugacgGCGcCAUUGACcuGGaCGUGGa -3' miRNA: 3'- aCAGCGGU------UGCuGUAGCUG--UC-GCACC- -5' |
|||||||
26646 | 5' | -53.1 | NC_005808.1 | + | 4855 | 0.67 | 0.69956 |
Target: 5'- aG-CGCCAGcCGGCGUgcUGggcGCAGUGUGGg -3' miRNA: 3'- aCaGCGGUU-GCUGUA--GC---UGUCGCACC- -5' |
|||||||
26646 | 5' | -53.1 | NC_005808.1 | + | 13932 | 0.67 | 0.699561 |
Target: 5'- aUGUCGCgCAGCGcCGUgGACuggaugcccucGGaCGUGGa -3' miRNA: 3'- -ACAGCG-GUUGCuGUAgCUG-----------UC-GCACC- -5' |
|||||||
26646 | 5' | -53.1 | NC_005808.1 | + | 24552 | 0.67 | 0.699561 |
Target: 5'- gGUCGCgCAGCG-CggCGAUGGCGaGGc -3' miRNA: 3'- aCAGCG-GUUGCuGuaGCUGUCGCaCC- -5' |
|||||||
26646 | 5' | -53.1 | NC_005808.1 | + | 32428 | 0.67 | 0.699561 |
Target: 5'- cGUCuGCCAA-GACGaCGGCAGCGa-- -3' miRNA: 3'- aCAG-CGGUUgCUGUaGCUGUCGCacc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home