miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26646 5' -53.1 NC_005808.1 + 20609 0.69 0.632402
Target:  5'- -uUCGCCAgGCGGCGUCGcagguCGGUGUcGGc -3'
miRNA:   3'- acAGCGGU-UGCUGUAGCu----GUCGCA-CC- -5'
26646 5' -53.1 NC_005808.1 + 34859 0.69 0.632402
Target:  5'- cGUCGCCAACaGCAagcCGGCcgccgAGCGUGc -3'
miRNA:   3'- aCAGCGGUUGcUGUa--GCUG-----UCGCACc -5'
26646 5' -53.1 NC_005808.1 + 38915 0.69 0.621144
Target:  5'- cGUCGCCggGugGAUucgcaCGAaGGCGUGGa -3'
miRNA:   3'- aCAGCGG--UugCUGua---GCUgUCGCACC- -5'
26646 5' -53.1 NC_005808.1 + 37329 0.69 0.621143
Target:  5'- cGUgGCgCAGCauGGCAUCGcGCuGCGUGGc -3'
miRNA:   3'- aCAgCG-GUUG--CUGUAGC-UGuCGCACC- -5'
26646 5' -53.1 NC_005808.1 + 28668 0.69 0.609896
Target:  5'- --gUGCCGGCGGCcUCGcCAGCGcGGc -3'
miRNA:   3'- acaGCGGUUGCUGuAGCuGUCGCaCC- -5'
26646 5' -53.1 NC_005808.1 + 9847 0.69 0.598668
Target:  5'- -cUCGgUuuCGGCGUCGAUgAGCGUGGc -3'
miRNA:   3'- acAGCgGuuGCUGUAGCUG-UCGCACC- -5'
26646 5' -53.1 NC_005808.1 + 23424 0.69 0.598667
Target:  5'- --aCGCCAcCGuguuCAUCGGCGGCGaGGc -3'
miRNA:   3'- acaGCGGUuGCu---GUAGCUGUCGCaCC- -5'
26646 5' -53.1 NC_005808.1 + 28558 0.69 0.597546
Target:  5'- gGcCGCCGgccaucgcggcGCGcACGUCGgccaccgGCAGCGUGGu -3'
miRNA:   3'- aCaGCGGU-----------UGC-UGUAGC-------UGUCGCACC- -5'
26646 5' -53.1 NC_005808.1 + 19242 0.7 0.57631
Target:  5'- cGaCGCCGGCGGCAcgGGCAGCGa-- -3'
miRNA:   3'- aCaGCGGUUGCUGUagCUGUCGCacc -5'
26646 5' -53.1 NC_005808.1 + 28039 0.7 0.5652
Target:  5'- cGUCGCCGaagaacacgucgGCGACGgucugcUCGAaCAGCG-GGc -3'
miRNA:   3'- aCAGCGGU------------UGCUGU------AGCU-GUCGCaCC- -5'
26646 5' -53.1 NC_005808.1 + 40888 0.7 0.5652
Target:  5'- uUGUCGCCAcCGACA-CGAUGGaCGaauUGGu -3'
miRNA:   3'- -ACAGCGGUuGCUGUaGCUGUC-GC---ACC- -5'
26646 5' -53.1 NC_005808.1 + 37694 0.7 0.55856
Target:  5'- cGUCGCCGACcugucgaACAUCGAaggacgcaugauuGCGUGGc -3'
miRNA:   3'- aCAGCGGUUGc------UGUAGCUgu-----------CGCACC- -5'
26646 5' -53.1 NC_005808.1 + 12028 0.7 0.554146
Target:  5'- cGUgGCCGGCGAgGUCuugccCAGCGUGu -3'
miRNA:   3'- aCAgCGGUUGCUgUAGcu---GUCGCACc -5'
26646 5' -53.1 NC_005808.1 + 2218 0.7 0.554145
Target:  5'- -uUCGCCAACGuguaCGGCGGCGcGGu -3'
miRNA:   3'- acAGCGGUUGCuguaGCUGUCGCaCC- -5'
26646 5' -53.1 NC_005808.1 + 28293 0.7 0.554145
Target:  5'- aGUCcgacCCGcGCGugGUCGuCGGCGUGGc -3'
miRNA:   3'- aCAGc---GGU-UGCugUAGCuGUCGCACC- -5'
26646 5' -53.1 NC_005808.1 + 35153 0.7 0.547543
Target:  5'- gGUUGCCGaggAUGGCGuugucuaccgugcgcUCGGCGGCGUGc -3'
miRNA:   3'- aCAGCGGU---UGCUGU---------------AGCUGUCGCACc -5'
26646 5' -53.1 NC_005808.1 + 29962 0.7 0.543156
Target:  5'- uUGUCGUC-GCGGCGcaCGACGGCcUGGa -3'
miRNA:   3'- -ACAGCGGuUGCUGUa-GCUGUCGcACC- -5'
26646 5' -53.1 NC_005808.1 + 22072 0.7 0.531152
Target:  5'- gGUCGCgGucggcgcGCGGC-UCGAUGGCGUGa -3'
miRNA:   3'- aCAGCGgU-------UGCUGuAGCUGUCGCACc -5'
26646 5' -53.1 NC_005808.1 + 7735 0.7 0.525727
Target:  5'- aUGcCGCCAaagaacggcgcguguACGGCAagGAgcCGGCGUGGg -3'
miRNA:   3'- -ACaGCGGU---------------UGCUGUagCU--GUCGCACC- -5'
26646 5' -53.1 NC_005808.1 + 35350 0.7 0.521403
Target:  5'- ---gGCCGGCGACAUCGGCccgcGCcaGUGGc -3'
miRNA:   3'- acagCGGUUGCUGUAGCUGu---CG--CACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.