miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26646 5' -53.1 NC_005808.1 + 33596 0.67 0.732371
Target:  5'- -uUCGCCAGCGguggccguGCcgCGAUAGCcagcgGUGGc -3'
miRNA:   3'- acAGCGGUUGC--------UGuaGCUGUCG-----CACC- -5'
26646 5' -53.1 NC_005808.1 + 33644 0.67 0.732371
Target:  5'- -uUCGCCAGCGguggccguGCcgCGAUAGCcagcgGUGGc -3'
miRNA:   3'- acAGCGGUUGC--------UGuaGCUGUCG-----CACC- -5'
26646 5' -53.1 NC_005808.1 + 29566 0.67 0.721523
Target:  5'- cGUCGCCAuUGACGUgGACAcgaccgacGCGgaacUGGc -3'
miRNA:   3'- aCAGCGGUuGCUGUAgCUGU--------CGC----ACC- -5'
26646 5' -53.1 NC_005808.1 + 1934 0.67 0.721523
Target:  5'- gGUCGCCAAUuuCAUCaagcACGGCGaGGa -3'
miRNA:   3'- aCAGCGGUUGcuGUAGc---UGUCGCaCC- -5'
26646 5' -53.1 NC_005808.1 + 17355 0.67 0.710582
Target:  5'- aUGcgCGCCcGCGGCGcCGGCuuCGUGGa -3'
miRNA:   3'- -ACa-GCGGuUGCUGUaGCUGucGCACC- -5'
26646 5' -53.1 NC_005808.1 + 24552 0.67 0.699561
Target:  5'- gGUCGCgCAGCG-CggCGAUGGCGaGGc -3'
miRNA:   3'- aCAGCG-GUUGCuGuaGCUGUCGCaCC- -5'
26646 5' -53.1 NC_005808.1 + 13932 0.67 0.699561
Target:  5'- aUGUCGCgCAGCGcCGUgGACuggaugcccucGGaCGUGGa -3'
miRNA:   3'- -ACAGCG-GUUGCuGUAgCUG-----------UC-GCACC- -5'
26646 5' -53.1 NC_005808.1 + 32428 0.67 0.699561
Target:  5'- cGUCuGCCAA-GACGaCGGCAGCGa-- -3'
miRNA:   3'- aCAG-CGGUUgCUGUaGCUGUCGCacc -5'
26646 5' -53.1 NC_005808.1 + 4855 0.67 0.69956
Target:  5'- aG-CGCCAGcCGGCGUgcUGggcGCAGUGUGGg -3'
miRNA:   3'- aCaGCGGUU-GCUGUA--GC---UGUCGCACC- -5'
26646 5' -53.1 NC_005808.1 + 15631 0.67 0.69956
Target:  5'- cGUCGUCAcugacgGCGcCAUUGACcuGGaCGUGGa -3'
miRNA:   3'- aCAGCGGU------UGCuGUAGCUG--UC-GCACC- -5'
26646 5' -53.1 NC_005808.1 + 9185 0.68 0.677324
Target:  5'- uUGgCGCCGuCGACGuuggccugcUCGGCGGCGcGGc -3'
miRNA:   3'- -ACaGCGGUuGCUGU---------AGCUGUCGCaCC- -5'
26646 5' -53.1 NC_005808.1 + 32495 0.68 0.677323
Target:  5'- aGUCGCUGcCGuCGUCuuGGCAGaCGUGGc -3'
miRNA:   3'- aCAGCGGUuGCuGUAG--CUGUC-GCACC- -5'
26646 5' -53.1 NC_005808.1 + 5896 0.68 0.666132
Target:  5'- gGUCGCCAGCGugGU-GAguGUGccgccgGGa -3'
miRNA:   3'- aCAGCGGUUGCugUAgCUguCGCa-----CC- -5'
26646 5' -53.1 NC_005808.1 + 27236 0.68 0.666132
Target:  5'- gGUCGUCGA-GGCAUCcGCGugcggcGCGUGGg -3'
miRNA:   3'- aCAGCGGUUgCUGUAGcUGU------CGCACC- -5'
26646 5' -53.1 NC_005808.1 + 28772 0.68 0.654907
Target:  5'- cGUgCGCCGACaGCAUCGACcuUGUGa -3'
miRNA:   3'- aCA-GCGGUUGcUGUAGCUGucGCACc -5'
26646 5' -53.1 NC_005808.1 + 22422 0.68 0.654907
Target:  5'- -uUCGCCAGCcACGccUUGACGGCGgcGGa -3'
miRNA:   3'- acAGCGGUUGcUGU--AGCUGUCGCa-CC- -5'
26646 5' -53.1 NC_005808.1 + 5685 0.68 0.654907
Target:  5'- -cUCGCCA---ACAUCGACGcCGUGGc -3'
miRNA:   3'- acAGCGGUugcUGUAGCUGUcGCACC- -5'
26646 5' -53.1 NC_005808.1 + 37244 0.68 0.654907
Target:  5'- cGUaCGCUccACGGCGcggaUGGCGGCGUGGg -3'
miRNA:   3'- aCA-GCGGu-UGCUGUa---GCUGUCGCACC- -5'
26646 5' -53.1 NC_005808.1 + 11489 0.68 0.653783
Target:  5'- gGUCGCCuGCGACAcCGcaaaggGCAGCGccugcgcUGGc -3'
miRNA:   3'- aCAGCGGuUGCUGUaGC------UGUCGC-------ACC- -5'
26646 5' -53.1 NC_005808.1 + 35403 0.68 0.64366
Target:  5'- aUGUCGCCGGCcuuguGCAgcuucUCGGCGGUGgucGGa -3'
miRNA:   3'- -ACAGCGGUUGc----UGU-----AGCUGUCGCa--CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.