Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26647 | 3' | -54.6 | NC_005808.1 | + | 24802 | 0.66 | 0.705108 |
Target: 5'- cGCGUUGAaguCGCCGUacagcaucuGGCUGCgCAAUGGc -3' miRNA: 3'- -UGUAGCU---GCGGCA---------CCGAUG-GUUGCUc -5' |
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26647 | 3' | -54.6 | NC_005808.1 | + | 32658 | 0.66 | 0.705108 |
Target: 5'- --uUCGGCGCCGcgaaGCUGCCcGACGuGa -3' miRNA: 3'- uguAGCUGCGGCac--CGAUGG-UUGCuC- -5' |
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26647 | 3' | -54.6 | NC_005808.1 | + | 24628 | 0.66 | 0.705108 |
Target: 5'- cACGUCGAa-CCacaUGGCgUGCCGGCGGGc -3' miRNA: 3'- -UGUAGCUgcGGc--ACCG-AUGGUUGCUC- -5' |
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26647 | 3' | -54.6 | NC_005808.1 | + | 17707 | 0.66 | 0.694075 |
Target: 5'- -gAUCGugGCCGUa-CUGCCGcACGAu -3' miRNA: 3'- ugUAGCugCGGCAccGAUGGU-UGCUc -5' |
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26647 | 3' | -54.6 | NC_005808.1 | + | 28761 | 0.66 | 0.69186 |
Target: 5'- aGCAUCGACcuugugaacgaCGUGGCgcgccgcGCUGGCGAGg -3' miRNA: 3'- -UGUAGCUGcg---------GCACCGa------UGGUUGCUC- -5' |
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26647 | 3' | -54.6 | NC_005808.1 | + | 28835 | 0.66 | 0.682979 |
Target: 5'- aGCG-CGACGCCGUGcGC-GCCGA-GAa -3' miRNA: 3'- -UGUaGCUGCGGCAC-CGaUGGUUgCUc -5' |
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26647 | 3' | -54.6 | NC_005808.1 | + | 36203 | 0.66 | 0.682979 |
Target: 5'- gACAUCaccgagGGCGCCGcGGCgGCCGACc-- -3' miRNA: 3'- -UGUAG------CUGCGGCaCCGaUGGUUGcuc -5' |
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26647 | 3' | -54.6 | NC_005808.1 | + | 18411 | 0.66 | 0.682979 |
Target: 5'- cACGUCGGCGaagGUGGCguuguCCGcCGAGu -3' miRNA: 3'- -UGUAGCUGCgg-CACCGau---GGUuGCUC- -5' |
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26647 | 3' | -54.6 | NC_005808.1 | + | 8840 | 0.66 | 0.671833 |
Target: 5'- cCAUCGuGCGCCGcGuGCUGCCcgaAGCGGc -3' miRNA: 3'- uGUAGC-UGCGGCaC-CGAUGG---UUGCUc -5' |
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26647 | 3' | -54.6 | NC_005808.1 | + | 34209 | 0.66 | 0.660647 |
Target: 5'- gAUGUCGGCGUCGaGGUgGCCuGCGAu -3' miRNA: 3'- -UGUAGCUGCGGCaCCGaUGGuUGCUc -5' |
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26647 | 3' | -54.6 | NC_005808.1 | + | 5346 | 0.67 | 0.649434 |
Target: 5'- -uGUCGAUGUCGuUGGCgacaGCCAACa-- -3' miRNA: 3'- ugUAGCUGCGGC-ACCGa---UGGUUGcuc -5' |
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26647 | 3' | -54.6 | NC_005808.1 | + | 5618 | 0.67 | 0.638205 |
Target: 5'- cCGUCGAUaCCGUGGCgggcgACCuggGCGGa -3' miRNA: 3'- uGUAGCUGcGGCACCGa----UGGu--UGCUc -5' |
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26647 | 3' | -54.6 | NC_005808.1 | + | 36152 | 0.67 | 0.638205 |
Target: 5'- gACggCGACGCCuucgcgggcgGUGGUgucGCgAGCGAGg -3' miRNA: 3'- -UGuaGCUGCGG----------CACCGa--UGgUUGCUC- -5' |
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26647 | 3' | -54.6 | NC_005808.1 | + | 14913 | 0.67 | 0.626969 |
Target: 5'- aGCGUgCGGCGC--UGGCcGCCAACGGc -3' miRNA: 3'- -UGUA-GCUGCGgcACCGaUGGUUGCUc -5' |
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26647 | 3' | -54.6 | NC_005808.1 | + | 16836 | 0.67 | 0.615739 |
Target: 5'- cCAUCGccuucacguCGCCgGUGGCUacGCCcACGAGc -3' miRNA: 3'- uGUAGCu--------GCGG-CACCGA--UGGuUGCUC- -5' |
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26647 | 3' | -54.6 | NC_005808.1 | + | 23824 | 0.67 | 0.604523 |
Target: 5'- cGCAUCGGC-CCgGUGGC-GCCGGCa-- -3' miRNA: 3'- -UGUAGCUGcGG-CACCGaUGGUUGcuc -5' |
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26647 | 3' | -54.6 | NC_005808.1 | + | 5638 | 0.67 | 0.593332 |
Target: 5'- gGCGagGugGCCGUacacGGCggaaACCAGCGGu -3' miRNA: 3'- -UGUagCugCGGCA----CCGa---UGGUUGCUc -5' |
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26647 | 3' | -54.6 | NC_005808.1 | + | 29927 | 0.67 | 0.593332 |
Target: 5'- cGCAUCagUGCCGUGGCUuGCCAGucAGg -3' miRNA: 3'- -UGUAGcuGCGGCACCGA-UGGUUgcUC- -5' |
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26647 | 3' | -54.6 | NC_005808.1 | + | 5397 | 0.67 | 0.593332 |
Target: 5'- gACAUCGACaG-CGUGGUauccgugGCCGGCGAc -3' miRNA: 3'- -UGUAGCUG-CgGCACCGa------UGGUUGCUc -5' |
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26647 | 3' | -54.6 | NC_005808.1 | + | 3240 | 0.67 | 0.593332 |
Target: 5'- cGCAgcgGACGCCG-GGCuUGCCAugcuGCGAu -3' miRNA: 3'- -UGUag-CUGCGGCaCCG-AUGGU----UGCUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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