miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26647 3' -54.6 NC_005808.1 + 24802 0.66 0.705108
Target:  5'- cGCGUUGAaguCGCCGUacagcaucuGGCUGCgCAAUGGc -3'
miRNA:   3'- -UGUAGCU---GCGGCA---------CCGAUG-GUUGCUc -5'
26647 3' -54.6 NC_005808.1 + 32658 0.66 0.705108
Target:  5'- --uUCGGCGCCGcgaaGCUGCCcGACGuGa -3'
miRNA:   3'- uguAGCUGCGGCac--CGAUGG-UUGCuC- -5'
26647 3' -54.6 NC_005808.1 + 24628 0.66 0.705108
Target:  5'- cACGUCGAa-CCacaUGGCgUGCCGGCGGGc -3'
miRNA:   3'- -UGUAGCUgcGGc--ACCG-AUGGUUGCUC- -5'
26647 3' -54.6 NC_005808.1 + 17707 0.66 0.694075
Target:  5'- -gAUCGugGCCGUa-CUGCCGcACGAu -3'
miRNA:   3'- ugUAGCugCGGCAccGAUGGU-UGCUc -5'
26647 3' -54.6 NC_005808.1 + 28761 0.66 0.69186
Target:  5'- aGCAUCGACcuugugaacgaCGUGGCgcgccgcGCUGGCGAGg -3'
miRNA:   3'- -UGUAGCUGcg---------GCACCGa------UGGUUGCUC- -5'
26647 3' -54.6 NC_005808.1 + 28835 0.66 0.682979
Target:  5'- aGCG-CGACGCCGUGcGC-GCCGA-GAa -3'
miRNA:   3'- -UGUaGCUGCGGCAC-CGaUGGUUgCUc -5'
26647 3' -54.6 NC_005808.1 + 36203 0.66 0.682979
Target:  5'- gACAUCaccgagGGCGCCGcGGCgGCCGACc-- -3'
miRNA:   3'- -UGUAG------CUGCGGCaCCGaUGGUUGcuc -5'
26647 3' -54.6 NC_005808.1 + 18411 0.66 0.682979
Target:  5'- cACGUCGGCGaagGUGGCguuguCCGcCGAGu -3'
miRNA:   3'- -UGUAGCUGCgg-CACCGau---GGUuGCUC- -5'
26647 3' -54.6 NC_005808.1 + 8840 0.66 0.671833
Target:  5'- cCAUCGuGCGCCGcGuGCUGCCcgaAGCGGc -3'
miRNA:   3'- uGUAGC-UGCGGCaC-CGAUGG---UUGCUc -5'
26647 3' -54.6 NC_005808.1 + 34209 0.66 0.660647
Target:  5'- gAUGUCGGCGUCGaGGUgGCCuGCGAu -3'
miRNA:   3'- -UGUAGCUGCGGCaCCGaUGGuUGCUc -5'
26647 3' -54.6 NC_005808.1 + 5346 0.67 0.649434
Target:  5'- -uGUCGAUGUCGuUGGCgacaGCCAACa-- -3'
miRNA:   3'- ugUAGCUGCGGC-ACCGa---UGGUUGcuc -5'
26647 3' -54.6 NC_005808.1 + 5618 0.67 0.638205
Target:  5'- cCGUCGAUaCCGUGGCgggcgACCuggGCGGa -3'
miRNA:   3'- uGUAGCUGcGGCACCGa----UGGu--UGCUc -5'
26647 3' -54.6 NC_005808.1 + 36152 0.67 0.638205
Target:  5'- gACggCGACGCCuucgcgggcgGUGGUgucGCgAGCGAGg -3'
miRNA:   3'- -UGuaGCUGCGG----------CACCGa--UGgUUGCUC- -5'
26647 3' -54.6 NC_005808.1 + 14913 0.67 0.626969
Target:  5'- aGCGUgCGGCGC--UGGCcGCCAACGGc -3'
miRNA:   3'- -UGUA-GCUGCGgcACCGaUGGUUGCUc -5'
26647 3' -54.6 NC_005808.1 + 16836 0.67 0.615739
Target:  5'- cCAUCGccuucacguCGCCgGUGGCUacGCCcACGAGc -3'
miRNA:   3'- uGUAGCu--------GCGG-CACCGA--UGGuUGCUC- -5'
26647 3' -54.6 NC_005808.1 + 23824 0.67 0.604523
Target:  5'- cGCAUCGGC-CCgGUGGC-GCCGGCa-- -3'
miRNA:   3'- -UGUAGCUGcGG-CACCGaUGGUUGcuc -5'
26647 3' -54.6 NC_005808.1 + 5638 0.67 0.593332
Target:  5'- gGCGagGugGCCGUacacGGCggaaACCAGCGGu -3'
miRNA:   3'- -UGUagCugCGGCA----CCGa---UGGUUGCUc -5'
26647 3' -54.6 NC_005808.1 + 29927 0.67 0.593332
Target:  5'- cGCAUCagUGCCGUGGCUuGCCAGucAGg -3'
miRNA:   3'- -UGUAGcuGCGGCACCGA-UGGUUgcUC- -5'
26647 3' -54.6 NC_005808.1 + 5397 0.67 0.593332
Target:  5'- gACAUCGACaG-CGUGGUauccgugGCCGGCGAc -3'
miRNA:   3'- -UGUAGCUG-CgGCACCGa------UGGUUGCUc -5'
26647 3' -54.6 NC_005808.1 + 3240 0.67 0.593332
Target:  5'- cGCAgcgGACGCCG-GGCuUGCCAugcuGCGAu -3'
miRNA:   3'- -UGUag-CUGCGGCaCCG-AUGGU----UGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.