miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26648 3' -51.8 NC_005808.1 + 5803 1.09 0.001846
Target:  5'- aACUCGCCGACAAACUUAGCCGAACCGu -3'
miRNA:   3'- -UGAGCGGCUGUUUGAAUCGGCUUGGC- -5'
26648 3' -51.8 NC_005808.1 + 12083 0.67 0.796094
Target:  5'- cCUCGCCGGCcacggccgcGCUgcUGGCCGAcguggaaaagGCCa -3'
miRNA:   3'- uGAGCGGCUGuu-------UGA--AUCGGCU----------UGGc -5'
26648 3' -51.8 NC_005808.1 + 33735 0.66 0.815901
Target:  5'- gAUUCGCCaGCGG---UGGCCGuGCCGg -3'
miRNA:   3'- -UGAGCGGcUGUUugaAUCGGCuUGGC- -5'
26648 3' -51.8 NC_005808.1 + 25381 0.66 0.852919
Target:  5'- --cCGgCGACGAGCgccggUGGCaGGGCCGg -3'
miRNA:   3'- ugaGCgGCUGUUUGa----AUCGgCUUGGC- -5'
26648 3' -51.8 NC_005808.1 + 23061 0.71 0.540162
Target:  5'- aGCagGCCGAcCAGGCgaaAGCCGAAuCCGa -3'
miRNA:   3'- -UGagCGGCU-GUUUGaa-UCGGCUU-GGC- -5'
26648 3' -51.8 NC_005808.1 + 9623 0.7 0.585193
Target:  5'- uGCUCGCCaccGGCGAGCagaucgcacUGGCCGAACa- -3'
miRNA:   3'- -UGAGCGG---CUGUUUGa--------AUCGGCUUGgc -5'
26648 3' -51.8 NC_005808.1 + 18465 0.69 0.665218
Target:  5'- cUUCGCCGACG----UGGCCGccACCGg -3'
miRNA:   3'- uGAGCGGCUGUuugaAUCGGCu-UGGC- -5'
26648 3' -51.8 NC_005808.1 + 34953 0.69 0.665218
Target:  5'- gGCUUGCCGAUGAACUgcagcgcacGCuCGGcgGCCGg -3'
miRNA:   3'- -UGAGCGGCUGUUUGAau-------CG-GCU--UGGC- -5'
26648 3' -51.8 NC_005808.1 + 33962 0.68 0.710453
Target:  5'- --gCGCCGcGCAGAUUgcuGCCGAACaCGa -3'
miRNA:   3'- ugaGCGGC-UGUUUGAau-CGGCUUG-GC- -5'
26648 3' -51.8 NC_005808.1 + 17725 0.67 0.785906
Target:  5'- aGCcCGCCGACGcaucaaGAUcgUGGCCGuacuGCCGc -3'
miRNA:   3'- -UGaGCGGCUGU------UUGa-AUCGGCu---UGGC- -5'
26648 3' -51.8 NC_005808.1 + 4700 0.67 0.765023
Target:  5'- uCUUGCCGACccuGCggcAGCgCGGGCCa -3'
miRNA:   3'- uGAGCGGCUGuu-UGaa-UCG-GCUUGGc -5'
26648 3' -51.8 NC_005808.1 + 2709 0.69 0.687952
Target:  5'- cCUCGCaCGGCAAGC---GCCGGACg- -3'
miRNA:   3'- uGAGCG-GCUGUUUGaauCGGCUUGgc -5'
26648 3' -51.8 NC_005808.1 + 42310 0.77 0.247993
Target:  5'- uGCUCGCCGACcauccggguguGCUUGGCCu-GCCGa -3'
miRNA:   3'- -UGAGCGGCUGuu---------UGAAUCGGcuUGGC- -5'
26648 3' -51.8 NC_005808.1 + 32612 0.67 0.775545
Target:  5'- gGCaUCGCCGGCGgcAGCauccUGGCCGGcaucACCa -3'
miRNA:   3'- -UG-AGCGGCUGU--UUGa---AUCGGCU----UGGc -5'
26648 3' -51.8 NC_005808.1 + 27578 0.75 0.324006
Target:  5'- gACcgCGCCGAgAAGCUggcGGCCGAggccGCCGg -3'
miRNA:   3'- -UGa-GCGGCUgUUUGAa--UCGGCU----UGGC- -5'
26648 3' -51.8 NC_005808.1 + 21349 0.69 0.67547
Target:  5'- --aCGCCGACc-GCUgGGCCGAcacuuacGCCGa -3'
miRNA:   3'- ugaGCGGCUGuuUGAaUCGGCU-------UGGC- -5'
26648 3' -51.8 NC_005808.1 + 25711 0.67 0.785906
Target:  5'- --aCGCCGGCAGAacu-GCCGAGgUGg -3'
miRNA:   3'- ugaGCGGCUGUUUgaauCGGCUUgGC- -5'
26648 3' -51.8 NC_005808.1 + 9360 0.66 0.805104
Target:  5'- -gUCGCCGAgGAagucaauGCgcAGCCGGuguACCGg -3'
miRNA:   3'- ugAGCGGCUgUU-------UGaaUCGGCU---UGGC- -5'
26648 3' -51.8 NC_005808.1 + 23623 0.72 0.485655
Target:  5'- cACcUGCCGGCGAugUcGGCCGAgGCCa -3'
miRNA:   3'- -UGaGCGGCUGUUugAaUCGGCU-UGGc -5'
26648 3' -51.8 NC_005808.1 + 19207 0.7 0.596579
Target:  5'- uCUgGCUGACGGugUgggGGCCGAACa- -3'
miRNA:   3'- uGAgCGGCUGUUugAa--UCGGCUUGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.