Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26648 | 3' | -51.8 | NC_005808.1 | + | 1182 | 0.67 | 0.775545 |
Target: 5'- uCUCGCCGcCGGGgUcGGCCGggUUGu -3' miRNA: 3'- uGAGCGGCuGUUUgAaUCGGCuuGGC- -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 32612 | 0.67 | 0.775545 |
Target: 5'- gGCaUCGCCGGCGgcAGCauccUGGCCGGcaucACCa -3' miRNA: 3'- -UG-AGCGGCUGU--UUGa---AUCGGCU----UGGc -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 4700 | 0.67 | 0.765023 |
Target: 5'- uCUUGCCGACccuGCggcAGCgCGGGCCa -3' miRNA: 3'- uGAGCGGCUGuu-UGaa-UCG-GCUUGGc -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 4822 | 0.67 | 0.754353 |
Target: 5'- uGCUgGCCGGCGAcaggucGCcgUAGUCGAugACCa -3' miRNA: 3'- -UGAgCGGCUGUU------UGa-AUCGGCU--UGGc -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 17084 | 0.68 | 0.743548 |
Target: 5'- gGCgaaGCCGGCGcgguuCUcGGCCGGGCCu -3' miRNA: 3'- -UGag-CGGCUGUuu---GAaUCGGCUUGGc -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 31508 | 0.68 | 0.732622 |
Target: 5'- uGC-CGCCGGCGuGCU--GCUGGGCCu -3' miRNA: 3'- -UGaGCGGCUGUuUGAauCGGCUUGGc -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 18365 | 0.68 | 0.721586 |
Target: 5'- gUUUGCCGGCGgcgAGgUUGGCCuuGCCGa -3' miRNA: 3'- uGAGCGGCUGU---UUgAAUCGGcuUGGC- -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 33962 | 0.68 | 0.710453 |
Target: 5'- --gCGCCGcGCAGAUUgcuGCCGAACaCGa -3' miRNA: 3'- ugaGCGGC-UGUUUGAau-CGGCUUG-GC- -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 11184 | 0.68 | 0.710453 |
Target: 5'- uGCUCGCaCGuuuGAACcaaUUGGCCGcAGCCGa -3' miRNA: 3'- -UGAGCG-GCug-UUUG---AAUCGGC-UUGGC- -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 1527 | 0.69 | 0.687952 |
Target: 5'- uAUUCGCCGcccaGCAGuucggcCUUgguaaAGCCGAACCGc -3' miRNA: 3'- -UGAGCGGC----UGUUu-----GAA-----UCGGCUUGGC- -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 11776 | 0.69 | 0.687952 |
Target: 5'- gAUUUGCCGGCAGAaugguGCCG-ACCa -3' miRNA: 3'- -UGAGCGGCUGUUUgaau-CGGCuUGGc -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 2709 | 0.69 | 0.687952 |
Target: 5'- cCUCGCaCGGCAAGC---GCCGGACg- -3' miRNA: 3'- uGAGCG-GCUGUUUGaauCGGCUUGgc -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 34367 | 0.69 | 0.676608 |
Target: 5'- cUUCGCCGACGAggGCacGGCCGcGCaCGa -3' miRNA: 3'- uGAGCGGCUGUU--UGaaUCGGCuUG-GC- -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 21349 | 0.69 | 0.67547 |
Target: 5'- --aCGCCGACc-GCUgGGCCGAcacuuacGCCGa -3' miRNA: 3'- ugaGCGGCUGuuUGAaUCGGCU-------UGGC- -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 34953 | 0.69 | 0.665218 |
Target: 5'- gGCUUGCCGAUGAACUgcagcgcacGCuCGGcgGCCGg -3' miRNA: 3'- -UGAGCGGCUGUUUGAau-------CG-GCU--UGGC- -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 18465 | 0.69 | 0.665218 |
Target: 5'- cUUCGCCGACG----UGGCCGccACCGg -3' miRNA: 3'- uGAGCGGCUGUuugaAUCGGCu-UGGC- -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 35018 | 0.69 | 0.661794 |
Target: 5'- -gUCGCCGAC-GACUUcguggacguguccaAGCCGGuggcGCCGc -3' miRNA: 3'- ugAGCGGCUGuUUGAA--------------UCGGCU----UGGC- -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 28224 | 0.69 | 0.653794 |
Target: 5'- --aCGCCGACGAccacGCgcgGGUCGGACUGc -3' miRNA: 3'- ugaGCGGCUGUU----UGaa-UCGGCUUGGC- -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 26499 | 0.69 | 0.642349 |
Target: 5'- cCUCGCCGACucGCa-AGCCGGcaucauucACCGc -3' miRNA: 3'- uGAGCGGCUGuuUGaaUCGGCU--------UGGC- -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 19207 | 0.7 | 0.596579 |
Target: 5'- uCUgGCUGACGGugUgggGGCCGAACa- -3' miRNA: 3'- uGAgCGGCUGUUugAa--UCGGCUUGgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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