Results 21 - 40 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26651 | 3' | -55.3 | NC_005808.1 | + | 38142 | 0.67 | 0.558724 |
Target: 5'- cGCUugaGCGcaUCGCAGACCA-CGAaGGUc -3' miRNA: 3'- aCGA---CGCa-AGCGUCUGGUaGCUgCCG- -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 2731 | 0.68 | 0.504708 |
Target: 5'- cUGCucgaUGCGUacCGCaAGACC-UCGcACGGCa -3' miRNA: 3'- -ACG----ACGCAa-GCG-UCUGGuAGC-UGCCG- -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 12671 | 0.69 | 0.483726 |
Target: 5'- cGCgucgGCGccaugCGCAaauUCAUCGACGGCu -3' miRNA: 3'- aCGa---CGCaa---GCGUcu-GGUAGCUGCCG- -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 22908 | 0.66 | 0.636625 |
Target: 5'- cGCaGCGcgCGCugucGGCUGUCGGCaGCg -3' miRNA: 3'- aCGaCGCaaGCGu---CUGGUAGCUGcCG- -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 4690 | 0.67 | 0.547769 |
Target: 5'- -cCUGCGgcagCGCGGGCCAacaUUGGCcuGGCu -3' miRNA: 3'- acGACGCaa--GCGUCUGGU---AGCUG--CCG- -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 23443 | 0.69 | 0.442094 |
Target: 5'- gUGCUGauuUUCaGCGGGCacgccaccguguuCAUCGGCGGCg -3' miRNA: 3'- -ACGACgc-AAG-CGUCUG-------------GUAGCUGCCG- -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 18162 | 0.66 | 0.62543 |
Target: 5'- cGCgaagGCGUccugguUCGCGccGGCU-UCGGCGGCc -3' miRNA: 3'- aCGa---CGCA------AGCGU--CUGGuAGCUGCCG- -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 11914 | 0.69 | 0.433228 |
Target: 5'- cGCgGgGUUCGCccAGGCCAaCcGCGGCg -3' miRNA: 3'- aCGaCgCAAGCG--UCUGGUaGcUGCCG- -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 16202 | 0.67 | 0.603067 |
Target: 5'- aGCgUGCGgcCGCAGuccuacgucgggGCCAcCGACGuGCa -3' miRNA: 3'- aCG-ACGCaaGCGUC------------UGGUaGCUGC-CG- -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 4175 | 0.69 | 0.433228 |
Target: 5'- cGCUGCag-CGCAGGCUggCGgaaacaccACGGCg -3' miRNA: 3'- aCGACGcaaGCGUCUGGuaGC--------UGCCG- -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 32438 | 0.68 | 0.504708 |
Target: 5'- cUGCUggGCGgcCG-GGGCC-UCGGCGGCg -3' miRNA: 3'- -ACGA--CGCaaGCgUCUGGuAGCUGCCG- -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 21220 | 0.68 | 0.493118 |
Target: 5'- cGCUGUugaaccaGggCGCGGACa--CGGCGGCc -3' miRNA: 3'- aCGACG-------CaaGCGUCUGguaGCUGCCG- -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 36823 | 0.66 | 0.647816 |
Target: 5'- aGCaccgUGCGgUCGaaguGGCUAUUGugGGCg -3' miRNA: 3'- aCG----ACGCaAGCgu--CUGGUAGCugCCG- -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 12279 | 0.66 | 0.670143 |
Target: 5'- gUGCUGCG-UC-CcGACCAggGGCaGGCa -3' miRNA: 3'- -ACGACGCaAGcGuCUGGUagCUG-CCG- -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 32681 | 0.68 | 0.488933 |
Target: 5'- cGCgGCGUcgcggcccuugaCGCGGGCCAgcuuggucacagcgUCGGCGGUg -3' miRNA: 3'- aCGaCGCAa-----------GCGUCUGGU--------------AGCUGCCG- -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 29057 | 0.68 | 0.536883 |
Target: 5'- gGCgGC--UCGUAGGCCAUCaGCGGg -3' miRNA: 3'- aCGaCGcaAGCGUCUGGUAGcUGCCg -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 11172 | 0.68 | 0.526073 |
Target: 5'- cGUUGCGUgCGCuggucGGCCGUggUGAUGGUg -3' miRNA: 3'- aCGACGCAaGCGu----CUGGUA--GCUGCCG- -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 22413 | 0.71 | 0.359239 |
Target: 5'- cGCgUGaCGUUCGCcaGCCAcgccUUGACGGCg -3' miRNA: 3'- aCG-AC-GCAAGCGucUGGU----AGCUGCCG- -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 8559 | 0.66 | 0.655642 |
Target: 5'- cGCUcgaccucauccuggGCG-UCGUAGGCCGcgCGuGCGGCc -3' miRNA: 3'- aCGA--------------CGCaAGCGUCUGGUa-GC-UGCCG- -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 41454 | 0.66 | 0.658993 |
Target: 5'- cGacgGCGagCGCAaacGGCCGcugcucaugaUCGACGGCa -3' miRNA: 3'- aCga-CGCaaGCGU---CUGGU----------AGCUGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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