miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26651 5' -59.3 NC_005808.1 + 30093 0.78 0.070268
Target:  5'- cCGGGCGCcACGGCCCUugucccaggcgauGAGGCCGcGCc -3'
miRNA:   3'- -GCUCGUGaUGCCGGGG-------------CUCCGGUuCG- -5'
26651 5' -59.3 NC_005808.1 + 30060 0.67 0.368365
Target:  5'- gGAGCACgAUGGCCCguuCGAcGGCugcaucCAGGCc -3'
miRNA:   3'- gCUCGUGaUGCCGGG---GCU-CCG------GUUCG- -5'
26651 5' -59.3 NC_005808.1 + 29829 0.68 0.319248
Target:  5'- uCGcGCACgcgccUGGCagcagCCGAGGCCGAGUu -3'
miRNA:   3'- -GCuCGUGau---GCCGg----GGCUCCGGUUCG- -5'
26651 5' -59.3 NC_005808.1 + 29612 0.67 0.371818
Target:  5'- cCGAGCACggcguggguguccucUGCGGCCagGGGGCacAGCc -3'
miRNA:   3'- -GCUCGUG---------------AUGCCGGggCUCCGguUCG- -5'
26651 5' -59.3 NC_005808.1 + 29076 0.68 0.327082
Target:  5'- gCGGGuCAUccuCGGgCgCCGAGGUCAGGCc -3'
miRNA:   3'- -GCUC-GUGau-GCCgG-GGCUCCGGUUCG- -5'
26651 5' -59.3 NC_005808.1 + 28411 0.66 0.413084
Target:  5'- --cGCGC-GCuGCCCgaCGAGGCCAAGg -3'
miRNA:   3'- gcuCGUGaUGcCGGG--GCUCCGGUUCg -5'
26651 5' -59.3 NC_005808.1 + 27499 0.79 0.056013
Target:  5'- aGGGC-CUGCGGCCgCCGGGcgcggugcGCCAGGCg -3'
miRNA:   3'- gCUCGuGAUGCCGG-GGCUC--------CGGUUCG- -5'
26651 5' -59.3 NC_005808.1 + 26535 0.66 0.441472
Target:  5'- cCGAauGCcaaACUgACGGaUgCCGAGGUCGAGCg -3'
miRNA:   3'- -GCU--CG---UGA-UGCC-GgGGCUCCGGUUCG- -5'
26651 5' -59.3 NC_005808.1 + 23800 0.69 0.268365
Target:  5'- -uGGCGCUgcuGCGcGCCaCCGAGGCacuGGCc -3'
miRNA:   3'- gcUCGUGA---UGC-CGG-GGCUCCGgu-UCG- -5'
26651 5' -59.3 NC_005808.1 + 23298 0.7 0.230137
Target:  5'- gCGAgGCGCgguCGGUggCCGAGGCCGAGg -3'
miRNA:   3'- -GCU-CGUGau-GCCGg-GGCUCCGGUUCg -5'
26651 5' -59.3 NC_005808.1 + 21316 0.67 0.359829
Target:  5'- uCGAGCACUuCGGgCuuGAugccGGCCAccGCg -3'
miRNA:   3'- -GCUCGUGAuGCCgGggCU----CCGGUu-CG- -5'
26651 5' -59.3 NC_005808.1 + 21313 0.66 0.431886
Target:  5'- uGGGCAU--CGaCCCCGAGuugaucguGCCGGGCa -3'
miRNA:   3'- gCUCGUGauGCcGGGGCUC--------CGGUUCG- -5'
26651 5' -59.3 NC_005808.1 + 20298 0.67 0.38585
Target:  5'- gGAGCAa---GGCaCCCaAGGCCAacAGCc -3'
miRNA:   3'- gCUCGUgaugCCG-GGGcUCCGGU--UCG- -5'
26651 5' -59.3 NC_005808.1 + 20215 0.67 0.359829
Target:  5'- cCGAGCAaUACgaauuccaGGcCCCCGAaGGCguGGCa -3'
miRNA:   3'- -GCUCGUgAUG--------CC-GGGGCU-CCGguUCG- -5'
26651 5' -59.3 NC_005808.1 + 18766 0.7 0.224231
Target:  5'- cCGAuGCGCUGCuGCUgaCCGAGGCCc-GCg -3'
miRNA:   3'- -GCU-CGUGAUGcCGG--GGCUCCGGuuCG- -5'
26651 5' -59.3 NC_005808.1 + 18626 0.68 0.334254
Target:  5'- gCGAGC---GCGGCCuccaCCGAcgugaucgacuucGGCCAGGCc -3'
miRNA:   3'- -GCUCGugaUGCCGG----GGCU-------------CCGGUUCG- -5'
26651 5' -59.3 NC_005808.1 + 17436 0.73 0.146135
Target:  5'- uGAGCAg--UGGCCCCgccagcaucGAGGCCAGGUg -3'
miRNA:   3'- gCUCGUgauGCCGGGG---------CUCCGGUUCG- -5'
26651 5' -59.3 NC_005808.1 + 16574 0.66 0.441472
Target:  5'- uGuAGCGCgACGcGCCggaCGAGGCCGAccacGCg -3'
miRNA:   3'- gC-UCGUGaUGC-CGGg--GCUCCGGUU----CG- -5'
26651 5' -59.3 NC_005808.1 + 15793 0.68 0.343174
Target:  5'- uCGAGCGC-AUGGCCUCGc-GCCAguucgaugcccaGGCg -3'
miRNA:   3'- -GCUCGUGaUGCCGGGGCucCGGU------------UCG- -5'
26651 5' -59.3 NC_005808.1 + 15584 0.66 0.441472
Target:  5'- aCGAcGCGCUGCGGaugcaCCgCGccaucGGCCAGGa -3'
miRNA:   3'- -GCU-CGUGAUGCCg----GG-GCu----CCGGUUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.