miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26652 5' -57.7 NC_005808.1 + 34883 0.69 0.301902
Target:  5'- -cGAGCGUgcGCUGCaGuucaucggcaagcCGGCCGCCg -3'
miRNA:   3'- acUUCGCGuuCGACGaCu------------GCCGGCGG- -5'
26652 5' -57.7 NC_005808.1 + 34835 0.66 0.48655
Target:  5'- cGAGGCGC-GGCUGCacgaUGACcaGGCgcaCGCg -3'
miRNA:   3'- aCUUCGCGuUCGACG----ACUG--CCG---GCGg -5'
26652 5' -57.7 NC_005808.1 + 34688 0.73 0.170434
Target:  5'- -cGAGCGCAacgAGCaGCUGGCGaucuacgcacgcGCCGCCc -3'
miRNA:   3'- acUUCGCGU---UCGaCGACUGC------------CGGCGG- -5'
26652 5' -57.7 NC_005808.1 + 33992 0.69 0.336761
Target:  5'- ---uGUGCAgcGGCUGCUG-CG-CCGCCc -3'
miRNA:   3'- acuuCGCGU--UCGACGACuGCcGGCGG- -5'
26652 5' -57.7 NC_005808.1 + 32682 0.67 0.416826
Target:  5'- gUGAAGCcCGAGCaguucGCcGACGuGCuCGCCg -3'
miRNA:   3'- -ACUUCGcGUUCGa----CGaCUGC-CG-GCGG- -5'
26652 5' -57.7 NC_005808.1 + 32525 0.72 0.210156
Target:  5'- ---cGUGCAGGCUGgUGAUGccggccaggaugcuGCCGCCg -3'
miRNA:   3'- acuuCGCGUUCGACgACUGC--------------CGGCGG- -5'
26652 5' -57.7 NC_005808.1 + 32348 0.67 0.426415
Target:  5'- cGccGCcCAGGUcGCUG-CGGUCGCCg -3'
miRNA:   3'- aCuuCGcGUUCGaCGACuGCCGGCGG- -5'
26652 5' -57.7 NC_005808.1 + 28891 0.71 0.248369
Target:  5'- --uGGCGU-AGUUGCUGGCcGUCGCCg -3'
miRNA:   3'- acuUCGCGuUCGACGACUGcCGGCGG- -5'
26652 5' -57.7 NC_005808.1 + 28744 0.73 0.170434
Target:  5'- cGAcguGGCGCGccGC-GCUGGCgaGGCCGCCg -3'
miRNA:   3'- aCU---UCGCGUu-CGaCGACUG--CCGGCGG- -5'
26652 5' -57.7 NC_005808.1 + 28628 0.68 0.362163
Target:  5'- cGAcguGCGCGccGCgaugGCcGGCGGCCGCa -3'
miRNA:   3'- aCUu--CGCGUu-CGa---CGaCUGCCGGCGg -5'
26652 5' -57.7 NC_005808.1 + 28527 0.69 0.334294
Target:  5'- --cGGCGCu-GCuUGUUGaacggcacgaccuuGCGGCCGCCg -3'
miRNA:   3'- acuUCGCGuuCG-ACGAC--------------UGCCGGCGG- -5'
26652 5' -57.7 NC_005808.1 + 27870 0.67 0.407369
Target:  5'- ---cGCGCGAGgacgUGCUG-CGGCUGCg -3'
miRNA:   3'- acuuCGCGUUCg---ACGACuGCCGGCGg -5'
26652 5' -57.7 NC_005808.1 + 27824 0.66 0.455949
Target:  5'- ---cGCGCGcGCUGCccGCGGUggCGCCg -3'
miRNA:   3'- acuuCGCGUuCGACGacUGCCG--GCGG- -5'
26652 5' -57.7 NC_005808.1 + 27775 0.71 0.248369
Target:  5'- aUGAccGGCgGCGAGCcGCUGcCGGCgCGCg -3'
miRNA:   3'- -ACU--UCG-CGUUCGaCGACuGCCG-GCGg -5'
26652 5' -57.7 NC_005808.1 + 27575 0.71 0.229499
Target:  5'- ---cGCGcCGAGaaGCUGGCGGCCgagGCCg -3'
miRNA:   3'- acuuCGC-GUUCgaCGACUGCCGG---CGG- -5'
26652 5' -57.7 NC_005808.1 + 27524 0.68 0.345082
Target:  5'- cGcGGCGCGcuggcauaccAGCgccaggGCcuGCGGCCGCCg -3'
miRNA:   3'- aCuUCGCGU----------UCGa-----CGacUGCCGGCGG- -5'
26652 5' -57.7 NC_005808.1 + 27494 0.69 0.304953
Target:  5'- cGAGGaUGCcGGCgGCcu-CGGCCGCCa -3'
miRNA:   3'- aCUUC-GCGuUCGaCGacuGCCGGCGG- -5'
26652 5' -57.7 NC_005808.1 + 27416 0.67 0.398048
Target:  5'- cGucGCGCGccuGGCgcaccGCgcccGGCGGCCGCa -3'
miRNA:   3'- aCuuCGCGU---UCGa----CGa---CUGCCGGCGg -5'
26652 5' -57.7 NC_005808.1 + 26870 0.68 0.35355
Target:  5'- aUGGucGGCGgAAGCaagGCUGACGGCaGUg -3'
miRNA:   3'- -ACU--UCGCgUUCGa--CGACUGCCGgCGg -5'
26652 5' -57.7 NC_005808.1 + 26808 0.72 0.211855
Target:  5'- gGAAucGCaGCGGGCgcGCUGGCGGUgGCCc -3'
miRNA:   3'- aCUU--CG-CGUUCGa-CGACUGCCGgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.