miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26652 5' -57.7 NC_005808.1 + 8302 1.12 0.000205
Target:  5'- uUGAAGCGCAAGCUGCUGACGGCCGCCg -3'
miRNA:   3'- -ACUUCGCGUUCGACGACUGCCGGCGG- -5'
26652 5' -57.7 NC_005808.1 + 1028 0.7 0.29737
Target:  5'- aGuGGCuGCAAGCUGCcGugGGCacCGCg -3'
miRNA:   3'- aCuUCG-CGUUCGACGaCugCCG--GCGg -5'
26652 5' -57.7 NC_005808.1 + 33992 0.69 0.336761
Target:  5'- ---uGUGCAgcGGCUGCUG-CG-CCGCCc -3'
miRNA:   3'- acuuCGCGU--UCGACGACuGCcGGCGG- -5'
26652 5' -57.7 NC_005808.1 + 25374 0.66 0.507482
Target:  5'- -cGAGCGCcGGUgGCagGGcCGGCCGCa -3'
miRNA:   3'- acUUCGCGuUCGaCGa-CU-GCCGGCGg -5'
26652 5' -57.7 NC_005808.1 + 13139 0.73 0.175186
Target:  5'- gGAGGC-CGAGCgccaauucaacaUGCaGACGGCCGCa -3'
miRNA:   3'- aCUUCGcGUUCG------------ACGaCUGCCGGCGg -5'
26652 5' -57.7 NC_005808.1 + 14670 0.73 0.185045
Target:  5'- gGAAGCcgacGCA--CUGCUGAaaagcggauCGGCCGCCg -3'
miRNA:   3'- aCUUCG----CGUucGACGACU---------GCCGGCGG- -5'
26652 5' -57.7 NC_005808.1 + 26808 0.72 0.211855
Target:  5'- gGAAucGCaGCGGGCgcGCUGGCGGUgGCCc -3'
miRNA:   3'- aCUU--CG-CGUUCGa-CGACUGCCGgCGG- -5'
26652 5' -57.7 NC_005808.1 + 27575 0.71 0.229499
Target:  5'- ---cGCGcCGAGaaGCUGGCGGCCgagGCCg -3'
miRNA:   3'- acuuCGC-GUUCgaCGACUGCCGG---CGG- -5'
26652 5' -57.7 NC_005808.1 + 17009 0.71 0.254938
Target:  5'- --cGGCgGCAcGCUGCUgGACGG-CGCCg -3'
miRNA:   3'- acuUCG-CGUuCGACGA-CUGCCgGCGG- -5'
26652 5' -57.7 NC_005808.1 + 6691 0.7 0.289934
Target:  5'- -cAAGCGCGcGaaGCUGGCGGCggacuaCGCCa -3'
miRNA:   3'- acUUCGCGUuCgaCGACUGCCG------GCGG- -5'
26652 5' -57.7 NC_005808.1 + 37329 0.7 0.275502
Target:  5'- cGuGGCGCAGcauggcaucgcGCUGCg--UGGCCGCCu -3'
miRNA:   3'- aCuUCGCGUU-----------CGACGacuGCCGGCGG- -5'
26652 5' -57.7 NC_005808.1 + 27775 0.71 0.248369
Target:  5'- aUGAccGGCgGCGAGCcGCUGcCGGCgCGCg -3'
miRNA:   3'- -ACU--UCG-CGUUCGaCGACuGCCG-GCGg -5'
26652 5' -57.7 NC_005808.1 + 25695 0.76 0.108722
Target:  5'- cGAGGUGgAcgcGCUGCUGGCGaccgcGCCGCCg -3'
miRNA:   3'- aCUUCGCgUu--CGACGACUGC-----CGGCGG- -5'
26652 5' -57.7 NC_005808.1 + 26336 0.7 0.289934
Target:  5'- cGAuGCGCGAGCcgaccagGCcGGCGGgUGCCc -3'
miRNA:   3'- aCUuCGCGUUCGa------CGaCUGCCgGCGG- -5'
26652 5' -57.7 NC_005808.1 + 40281 0.74 0.14029
Target:  5'- cGAGGCGCAcGGCa--UGGCGGUCGCUg -3'
miRNA:   3'- aCUUCGCGU-UCGacgACUGCCGGCGG- -5'
26652 5' -57.7 NC_005808.1 + 19529 0.71 0.248369
Target:  5'- --uGGCGCAAGCUGaacuaUGGCGuGCaGCCc -3'
miRNA:   3'- acuUCGCGUUCGACg----ACUGC-CGgCGG- -5'
26652 5' -57.7 NC_005808.1 + 20691 0.7 0.289934
Target:  5'- -cGAGCGCAGGCcgacaccgaccUGC-GACG-CCGCCu -3'
miRNA:   3'- acUUCGCGUUCG-----------ACGaCUGCcGGCGG- -5'
26652 5' -57.7 NC_005808.1 + 39927 0.69 0.304953
Target:  5'- -uGAGCGCGGcccggcGCUGCUcgGGCGuGCCGaCCa -3'
miRNA:   3'- acUUCGCGUU------CGACGA--CUGC-CGGC-GG- -5'
26652 5' -57.7 NC_005808.1 + 28744 0.73 0.170434
Target:  5'- cGAcguGGCGCGccGC-GCUGGCgaGGCCGCCg -3'
miRNA:   3'- aCU---UCGCGUu-CGaCGACUG--CCGGCGG- -5'
26652 5' -57.7 NC_005808.1 + 18765 0.72 0.211855
Target:  5'- cGAuGCGCu-GCUGCUGACcgaGGcCCGCg -3'
miRNA:   3'- aCUuCGCGuuCGACGACUG---CC-GGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.